NAU2108, NAU2108 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2108
Genbank IDDR044192
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044192.1
Source TypeEST
Repeat MotifCAA(5)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2108_F: GGGGACTTCATCTGGTTCTA
Primer 2NAU2108_R: CAGTAGGCCAAGTCTCTCGT
Product Length217
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044192
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:11767880..11768097 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:14535853..14536079 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:11202605..11202831 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:14488454..14488677 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:11280273..11280493 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:29999213..29999436 -Gossypioides kirkii genome ISU_v3n/a
tig00019444_CRI-A2_v1.0.a1chromosometig00019444_CRI-A2_v1.0.a1:134076..134314 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:42904350..42904570 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:96230403..96230623 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold913.1supercontigscaffold913.1:263619..263845 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:45920354..45920571 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:11241246..11241463 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:13780162..13780388 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:11678893..11679110 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:14797958..14798184 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:11167372..11167589 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:14182167..14182393 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:11644371..11644588 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:14791157..14791383 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:11533308..11533525 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:14743210..14743436 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt07chromosomeDt07:12687513..12687739 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At07chromosomeAt07:14951819..14952042 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold23657supercontigscaffold23657:58322..58548 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1552supercontigscaffold1552:356459..356682 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:11607074..11607300 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:14475564..14475787 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:11326797..11327023 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:14582188..14582411 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:11706786..11707006 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:14432435..14432661 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:11824315..11824535 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:14471048..14471265 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:11531856..11532082 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:14721982..14722205 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:11835422..11835639 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:14941838..14942064 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:15497994..15498229 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:15692247..15692485 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:42296821..42297041 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:14754084..14754310 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:11565894..11566114 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:10058545..10058765 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:9913243..9913463 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:11440097..11440326 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:9353258..9353478 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:7613746..7613966 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:9336168..9336385 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:76719562..76719785 -Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:13458145..13458371 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:24377515..24377738 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044192.1DR044192.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Hai-7124 x Junmian-1, BC1 (2008) partAD_ch07_At.07N/A83.6NAU2108aView
2Hai-7124 x Junmian-1, BC1 (2008) partAD_ch07_At.07N/A111.8NAU2108bView
3AD-genome wide Reference Map (2009)AD_ch07_At.07N/A138nau2108View
40-153 x sGK9708, RIL (2016)AD_ch16_Dt.07N/A53.3nau2108View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch16_Dt.07N/A80.9nau2108View
6LMY22 x LY343, RIL (2016)chr.16N/A116.9nau2108View
7LMY22 x LY343, RIL (2020)D07N/A151.29nau2108View
8TM-1 x Hai-7124, BC1 (2007)AD_ch07_At.07N/A49.4NAU2108-350View
9TM-1 x Hai-7124, BC1 (2008)AD_ch07_At.07N/A50.43NAU2108-350View
10TM-1 x Hai-7124, BC1 (2012)AD_ch07_At.07N/A74.1NAU2108-350View
11PD 94042 x (AD)4-08, F2 (2016)AD_ch07_At.07N/A145.5NAU2108View
Sequence
>NAU2108 ID=NAU2108; Name=NAU2108; organism=Gossypium hirsutum; type=genetic_marker; length=217bp
GGGGACTTCATCTGGTTCTAATATTAACCACCAGCATATGTCGAAGATGC
TACCCCCACGCCAACAACAACAACAACAGGGAGCTTACAAACTTCGTTGT
CCTTAATCTCCTTAGATCCTCACACGTCGCTAATGCCCAAGAGCCCAGAT
TTAACTTGGATAACATTCATGAGTCTCCTACTGAGAGTTGCTAGCTCACG
AGAGACTTGGCCTACTG