NAU2016, NAU2016 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	NAU2016
Alias	NAU2016=NAU2063 NAU2063
Genbank ID	DR044137
Type	SSR
Species	Gossypium hirsutum
Germplasm	7235 7235
Source Sequence	DR044137.1
Source Type	EST
Repeat Motif	TC(11); TCT(4)
PCR Condition	Annealing temperature: 57
Primer 1	NAU2016_F: AGCATTTCTCCAAGACTCCA
Primer 2	NAU2016_R: CAGAGAAAAGGGACAGAGGA
Product Length	235
Publication	[view all]
Contact	Zhang, Tian-Zhen
Comment	Primer data obtained in 2007-05

Contact

Name

Details

Zhang, Tian-Zhen

First name:	Tian-Zhen
Last name:	Zhang
Title:	Professor
Institution:	Zhejiang University
Address:	College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:	China
Email:	cotton@zju.edu.cn
Phone:	+86 571 88982971
Fax:	+86 571 88982971
Keywords:	cotton genetics and genomics, and breeding
Last update:	18-Mar-2022

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DR044137

Publications


Year	Publication
2006	Han Z, Wang C, Song X, Guo W, Gou J, Li C, Chen X, Zhang T. Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. Theoretical and applied genetics. 2006; 112(3):430-439

Germplasm


Stock Name	Type
7235	accession
7235	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DR044137.1	DR044137.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Emian-22 x 3-79, BC1 (2011)	AD_ch11_At.11	N/A	22.99	NAU2016b	View
2	TM-1 x 3-79, RIL (2012)	AD_ch21_Dt.11	N/A	120.7	NAU2016b	View
3	TM-1 x 3-79, RIL (2014)	AD_ch21_Dt.11	N/A	131.8	NAU2016b	View
4	Emian-22 x 3-79, BC1 (2011)	AD_ch21_Dt.11	N/A	225.62	NAU2016a	View
5	TM-1 x 3-79, RIL (2012)	AD_ch11_At.11	N/A	146.95	NAU2016a	View
6	TM-1 x 3-79, RIL (2014)	AD_ch11_At.11	N/A	149.9	NAU2016a	View
7	AD-genome wide Reference Map (2009)	AD_ch11_At.11	N/A	174	nau2016	View
8	AD-genome wide Reference Map (2009)	AD_ch21_Dt.11	N/A	7	nau2016	View
9	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch11_At.11	N/A	208.5	nau2016	View
10	CCRI-35 x Yumian-1, RIL (2015)	AD_ch21_Dt.11	N/A	122.8	nau2016	View
11	TM-1 x Hai-7124, BC1 (2007)	AD_ch11_At.11	N/A	18.1	NAU2016-250	View
12	TM-1 x Hai-7124, BC1 (2008)	AD_ch11_At.11	N/A	18.13	NAU2016-250	View
13	TM-1 x Hai-7124, BC1 (2012)	AD_ch11_At.11	N/A	143.7	NAU2016-250	View
14	TM-1 x Hai-7124, BC1 (2007)	AD_ch21_Dt.11	N/A	18.5	NAU2016-200	View
15	TM-1 x Hai-7124, BC1 (2008)	AD_ch21_Dt.11	N/A	15.27	NAU2016-200	View
16	TM-1 x Hai-7124, BC1 (2012)	AD_ch21_Dt.11	N/A	163.6	NAU2016-200	View
17	CCRI-35 x Yumian-1, RIL (2017)	AD_ch21_Dt.11	N/A	142.31	NAU2016	View
18	TM-1 x 3-79, RIL (2012.v3)	AD_ch11_At.11	N/A	149.87	NAU2016a	View
19	TM-1 x 3-79, RIL (2012.v3)	AD_ch21_Dt.11	N/A	131.77	NAU2016b	View
20	PD 94042 x (AD)4-08, F2 (2016)	AD_ch11_At.11	N/A	1.7	NAU2016	View

Sequence

>NAU2016 ID=NAU2016; Name=NAU2016; organism=Gossypium hirsutum; type=genetic_marker; length=235bp
AGCATTTCTCCAAGACTCCAAAAATCAACCCAANACANCCCCATTTGCAG
ATTCCTCTTCTTCTTCTTNGTCTTTGTCTTCATCTTCTTCATCATTTCTG
TGTTTANCCCANAAATTTGCAGCTACTTCAGCTAATAACAGAAGCTCAAC
AATCTCTCTCTCTCTCTCTCTCTCTTTTTAACACCATGTTCACTTGTTAT
TAGAAAGCTTTCAACTCCTCTGTCCCTTTTCTCTG

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NAU2016, NAU2016 (genetic_marker) Gossypium hirsutum