NAU1302, NAU1302 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1302
Genbank IDBF279052
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TCCACT)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU1302_F: ACTCGGCGTATAATTTGGAA
Primer 2NAU1302_R: GAGGGAAAACCAAACAGAAA
Product Length221
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBF279052
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:60286786..60287008 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:113567631..113567849 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:56720041..56720249 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:109005537..109005755 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:53044345..53044552 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:118548870..118549089 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:8125664..8125878 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:13685181..13685397 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold347.1supercontigscaffold347.1:197351..197573 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold149.1supercontigscaffold149.1:507301..507519 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:56899052..56899274 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:94374947..94375165 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:59501957..59502180 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:112240774..112240992 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:60159277..60159499 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:115160480..115160698 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:59362655..59362877 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:115056342..115056560 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:56640728..56640950 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:110964566..110964789 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:59332744..59332952 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt08chromosomeDt08:59330448..59330656 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4615supercontigscaffold4615:219101..219319 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7158supercontigscaffold7158:30869..31077 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7158supercontigscaffold7158:28573..28781 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:56756428..56756636 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:109675280..109675498 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:58681757..58681965 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:110793657..110793875 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:109243027..109243242 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:60452677..60452885 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:118659557..118659776 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:109863718..109863936 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:60052070..60052292 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:116950975..116951193 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:121196832..121197050 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:122193034..122193254 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:53931037..53931245 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:55347343..55347551 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:41549759..41550148 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:38029333..38029547 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:57692334..57692554 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:36422677..36422891 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:30640289..30640503 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:37025427..37025647 -Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:108645182..108645391 +Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:95278518..95278733 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch24_Dt.08N/A33.5NAU1302View
2AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A167NAU1302View
3Yumian-1 x T586, RIL (2006)AD_ch08_At.08N/A35.6NAU1302View
47235 x TM-1, F2:3 (2005)AD_ch24_Dt.08N/A11NAU1302View
5PD6992 x SM3, F2:3 (2005)AD_ch08_At.08N/A0NAU1302View
6Yumian-1 x T586, RIL (2015)AD_ch08_At.08N/A92NAU1302View
7Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A51NAU1302View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A90.6NAU1302View
9CCRI-36 x Hai-7124, F2 (2007)AD_ch24_Dt.08N/A146.4NAU1302aView
10TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch08_At.08N/A25.6NAU1302aView
11CCRI-36 x Hai-7124, F2 (2007)AD_ch24_Dt.08N/A147.2NAU1302bView
12TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch24_Dt.08N/A110.8NAU1302bView
13TM-1 x Hai-7124, BC1 (2007)AD_ch24_Dt.08N/A39.3NAU1302-200View
14TM-1 x Hai-7124, BC1 (2008)AD_ch24_Dt.08N/A72.1NAU1302-200View
15TM-1 x Hai-7124, BC1 (2012)AD_ch24_Dt.08N/A94.1NAU1302-200View
16Yumian-1 x T586, RIL (2009)AD_ch08_At.08N/A26.2NAU1302/220y(C24)View
17TM-1 x 3-79, RIL (2011)AD_ch08_At.08N/A43.7NAU1302_216/203View
18CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A96.9NAU1302View
Sequence
>NAU1302 ID=NAU1302; Name=NAU1302; organism=Gossypium arboreum; type=genetic_marker; length=221bp
ACTCGGCGTATAATTTGGAAGGTTCAATTCCAAGAAATGAAAATCGAAAA
AAAAAAAAAAAGAAAAACAAAAAAGGGAAACAAAAGTTAGGGTTCATTTA
CTACAGGCAAGGCCAAGACACTAATACATAGCCAATCACTTGGTACCTCC
ACTTCCACTTCCACTTCAACTTCAGCTTCAATTACAACACTCCTGTTTTG
CTTTCTGTTTGGTTTTCCCTC