NAU1188, NAU1188 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1188
Genbank IDBG444171
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TA)13
PCR ConditionAnnealing temperature: 57
Primer 1NAU1188_F: ACAGGCTCCAAAATCAGGTA
Primer 2NAU1188_R: ATTAGCCCAGAAAACCACAA
Product Length250
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG444171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:6397111..6397347 +
A02chromosomeA02:81323243..81323489 +
CM018217.1chromosomeCM018217.1:6015748..6015986 +
CM018203.1chromosomeCM018203.1:91658112..91658360 +
D5_02chromosomeD5_02:5244021..5244257 +
KI_06chromosomeKI_06:44848503..44848735 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:7038685..7038926 -
D10_02chromosomeD10_02:6096347..6096585 +
CM016615.1chromosomeCM016615.1:10356440..10356702 +
Dt_chr3chromosomeDt_chr3:23248335..23248571 -
At_chr3chromosomeAt_chr3:43376271..43376517 -
D03chromosomeD03:6078969..6079205 +
A02chromosomeA02:74963073..74963319 +
Ghir_D03chromosomeGhir_D03:6178239..6178475 +
Ghir_A02chromosomeGhir_A02:99209285..99209531 +
D03chromosomeD03:6051472..6051708 +
A02chromosomeA02:99679400..99679646 +
D03chromosomeD03:6207484..6207720 +
D03chromosomeD03:6045039..6045275 +
A02chromosomeA02:95487977..95488223 +
At02chromosomeAt02:79900852..79901100 +
scaffold10688supercontigscaffold10688:73615..73863 +
scaffold7345supercontigscaffold7345:117265..117517 -
scaffold7345supercontigscaffold7345:108579..108817 -
Gbar_D03chromosomeGbar_D03:6056560..6056798 +
Gbar_A02chromosomeGbar_A02:91752731..91752979 +
D03chromosomeD03:6201072..6201310 +
A02chromosomeA02:93790909..93791157 +
CM017625.1chromosomeCM017625.1:6104324..6104562 +
CM017611.1chromosomeCM017611.1:95618175..95618421 +
CM017651.1chromosomeCM017651.1:6296080..6296318 +
CM017637.1chromosomeCM017637.1:100904534..100904778 +
CM017703.1chromosomeCM017703.1:6175330..6175568 +
CM017689.1chromosomeCM017689.1:93598554..93598800 +
D03chromosomeD03:6317157..6317393 +
A02chromosomeA02:99319833..99320079 +
Chr02chromosomeChr02:85223786..85224028 -
Chr02chromosomeChr02:94859873..94860116 -
Chr02chromosomeChr02:5884609..5884846 +
B_04chromosomeB_04:66698219..66698470 -
Chr03chromosomeChr03:5955871..5956109 +
chr03chromosomechr03:5121967..5122208 +
Chr_03chromosomeChr_03:4081692..4081931 +
Chr03chromosomeChr03:6398724..6398961 +
Chr03chromosomeChr03:4289812..4290050 +
Chr03_3463629chromosomeChr03_3463629:2696..2935 -
Chr03chromosomeChr03:4907402..4907640 +
E02chromosomeE02:9245103..9245341 +
F02chromosomeF02:6398896..6399137 +
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch02_At.02N/A16.8NAU1188View
2Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A81.3NAU1188View
3Yumian-1 x 7235, RIL (2015)AD_ch02_At.02N/A65NAU1188View
4Yumian-1 x T586, RIL (2009)AD_ch02_At.02N/A76.4NAU1188/270yView
Sequence
>NAU1188 ID=NAU1188; Name=NAU1188; organism=Gossypium arboreum; type=genetic_marker; length=250bp
ACAGGCTCCAAAATCAGGTAGAGTATGATGGAAGTGATGAAGAGATGATT
TTCTTATTATCTGCACTACATGATAATAGCTTACACAGATTGTTCTGAAG
TACTATACTTTTTTTTTTCCTTCTCTGGGTAAATTTTGATGTAGATTTTT
AGTTGATCTATGTATATATATATATATATATATATATATGAATCCTGTAT
TAGCTAAGGGGCTTCAAATACTTCTCTGGATTGTGGTTTTCTGGGCTAAT