NAU1162, NAU1162 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1162
Genbank IDBG446140
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(CAG )6
PCR ConditionAnnealing temperature: 57
Primer 1NAU1162_F: CTGAGTGAGCCATGAAGTTG
Primer 2NAU1162_R: TTCGGCTTCTGCTTTTACTT
Product Length188
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG446140
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch11_At.11N/A91NAU1162aView
2CCRI-35 x Yumian-1, RIL (2015)AD_ch11_At.11N/A91.7NAU1162aView
3CCRI-36 x Hai-7124, F2 (2007)AD_ch11_At.11N/A96.7NAU1162bView
4CCRI-35 x Yumian-1, RIL (2015)AD_ch21_Dt.11N/A168.4NAU1162bView
5AD-genome wide Reference Map (2009)AD_ch11_At.11N/A205NAU1162View
6JLZM x ZJXSLS, F2 (2008)A_JZ_A11N/A216.6NAU1162View
7Yumian-1 x T586, RIL (2006)AD_ch11_At.11N/A96NAU1162View
8PD6992 x SM3, F2:3 (2005)AD_ch11_At.11N/A3.4NAU1162View
9Yumian-1 x T586, RIL (2015)AD_ch11_At.11N/A33.1NAU1162View
10Yumian-1 x 7235, RIL (2015)AD_ch11_At.11N/A26.2NAU1162View
11TM-1 x Hai-7124, BC1 (2007)AD_ch11_At.11N/A101.2NAU1162-300View
12TM-1 x Hai-7124, BC1 (2008)AD_ch11_At.11N/A99.95NAU1162-300View
13TM-1 x Hai-7124, BC1 (2012)AD_ch11_At.11N/A62.3NAU1162-300View
14Yumian-1 x T586, RIL (2009)AD_ch11_At.11N/A95.4NAU1162/190t(C11)View
15TM-1 x Hai-7124, BC1S1 (2007)AD_ch11_At.11N/A65.5NAU1162_300View
16CCRI-35 x Yumian-1, RIL (2017)AD_ch11_At.11N/A71.97NAU1162View
17CCRI-35 x Yumian-1, RIL (2017)AD_ch21_Dt.11N/A63.66NAU1162View
18PD 94042 x (AD)4-08, F2 (2016)AD_ch11_At.11N/A165.3NAU1162View
Sequence
>NAU1162 ID=NAU1162; Name=NAU1162; organism=Gossypium arboreum; type=genetic_marker; length=188bp
CTGAGTGAGCCATGAAGTTGATGAAAAAAGAAGAAGAGACTCCTAAGGAA
ACGGTATCATAGCCAGTTGCCGAGGAGTCCAAGGAGTCCAAGGAGACTTC
TGAGCCAACAGTTGAAGAAACCAAAGAAAGCACAGAGTCTACAGAAGCAT
CAGCAGCAGCAGCAGCAGAAGTAAAAGCAGAAGCCGAA