NAU1085, NAU1085 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1085
Genbank IDBQ401402
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(CAATCC)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU1085_F: AGTCGCCCCTTCTCTAATTT
Primer 2NAU1085_R: TGTAAACCGAACTCGTTGTG
Product Length240
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ401402
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D07chromosomeD07:14057689..14057925 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A07chromosomeA07:17246332..17246571 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018221.1chromosomeCM018221.1:13387719..13387955 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018208.1chromosomeCM018208.1:17104294..17104533 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_07chromosomeD5_07:13290332..13290568 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_07chromosomeKI_07:29129335..29129571 +Gossypioides kirkii genome ISU_v3
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:15813712..15813951 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_07chromosomeD10_07:40961402..40961638 +Gossypium turneri (D10) genome NSF_v1_a2
CM016620.1chromosomeCM016620.1:92647390..92647615 +Gossypium australe (G2) genome CRI_v1.1
Dt_chr1chromosomeDt_chr1:50541792..50542028 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
At_chr9chromosomeAt_chr9:77264383..77264622 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D07chromosomeD07:13449817..13450053 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A07chromosomeA07:16350702..16350941 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D07chromosomeGhir_D07:13846663..13846899 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A07chromosomeGhir_A07:17517122..17517361 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D07chromosomeD07:13227830..13228066 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A07chromosomeA07:16778526..16778765 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D07chromosomeD07:13814991..13815227 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A07chromosomeA07:17543322..17543561 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A07chromosomeA07:17518441..17518680 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
At07chromosomeAt07:17745556..17745795 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold5396supercontigscaffold5396:188116..188352 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold6088supercontigscaffold6088:82827..83066 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D07chromosomeGbar_D07:13844780..13845016 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A07chromosomeGbar_A07:17086826..17087065 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D07chromosomeD07:13505813..13506049 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A07chromosomeA07:17099314..17099553 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017629.1chromosomeCM017629.1:13803212..13803448 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017616.1chromosomeCM017616.1:17052817..17053056 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017655.1chromosomeCM017655.1:14041812..14042054 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017642.1chromosomeCM017642.1:17056948..17057187 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017707.1chromosomeCM017707.1:13669658..13669894 -Gossypium darwinii (AD5) genome HGS_v1.1
CM017694.1chromosomeCM017694.1:17373310..17373549 -Gossypium darwinii (AD5) genome HGS_v1.1
D07chromosomeD07:14020565..14020801 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A07chromosomeA07:17688209..17688448 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr07chromosomeChr07:18274731..18274967 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr07chromosomeChr07:18516723..18516962 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr07chromosomeChr07:40291021..40291257 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_07chromosomeB_07:17679133..17679362 -Gossypium anomalum (B1) genome NSF_v1
Chr01chromosomeChr01:13617987..13618223 -Gossypium thurberi (D1-5) genome CRI_v1
chr01chromosomechr01:11527016..11527251 -Gossypium armourianum (D2-1) genome ISU_v1
Chr_01chromosomeChr_01:11195822..11196058 -Gossypium harknessii (D2-2) genome ISU_v1
Chr01chromosomeChr01:13464734..13464970 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr01_5981858chromosomeChr01_5981858:4172..4408 +Gossypium aridum (D4) genome ISU_v1
Chr01chromosomeChr01:8791802..8792037 -Gossypium gossypioides (D6) genome ISU_v1
Chr01chromosomeChr01:10826535..10826776 -Gossypium lobatum (D7) genome ISU_v1
E07chromosomeE07:74008388..74008617 +Gossypium stocksii (E1) genome NSF_v1
F07chromosomeF07:15862015..15862250 -Gossypium longicalyx (F1) genome NSF_v1
Chr07chromosomeChr07:30137709..30137938 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch07_At.07N/A48.9NAU1085View
2(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch07_At.07N/A93.5NAU1085View
3Yumian-1 x T586, RIL (2015)AD_ch07_At.07N/A76.8NAU1085View
4Yumian-1 x 7235, RIL (2015)AD_ch07_At.07N/A73NAU1085View
5TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch07_At.07N/A56.6NAU1085View
60-153 x sGK9708, RIL (2016)AD_ch07_At.07N/A38.6NAU1085View
7CCRI-35 x Yumian-1, RIL (2015)AD_ch07_At.07N/A80.6NAU1085View
80-153 x sGK9708, RIL (2017)AD_ch07_At.07N/A70.84NAU1085View
9LMY28 x XLZ24, RIL (2018)AD_ch07_At.07N/A30.6NAU1085View
10901-001 x sGK156, F2 (2019)AD_ch07_At.07N/A0NAU1085View
11Yumian-1 x T586, RIL (2009)AD_ch07_At.07N/A48.8NAU1085/250tView
12CCRI-35 x Yumian-1, RIL (2017)AD_ch07_At.07N/A44.18NAU1085View
Sequence
>NAU1085 ID=NAU1085; Name=NAU1085; organism=Gossypium arboreum; type=genetic_marker; length=240bp
AGTCGCCCCTTCTCTAATTTCATCTGATCGATCAGTTCTTTAAGCTTCAC
AATCCCAATCCCAATCCCATGCTTCTTTCCCTTTTCTCCTAATATTTTTT
CCCGGGAAAACTGTAGAATCCTAGACATTTCTTTGTTTGGAAGAAGTCAA
ATAAGAATCGAGGAGGAGAAAGGAGGAGGAGGAGCTGTAGATAGAAGATT
TGTGAAAAAATGGCCTCGACCACAACGAGTTCGGTTTACA