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Marker Overview
| Name | NAU0934 |
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| Alias | NAU934
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| Genbank ID | BQ409912 |
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| Type | SSR |
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| Species | Gossypium arboreum |
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| Germplasm | AKA 8400
AKA 8400
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| Source Type | EST |
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| Repeat Motif | (TC)11 |
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| PCR Condition | Annealing temperature: 57 |
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| Primer 1 | NAU934_F: TGCTTTCGTATCCTTTTTCC |
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| Primer 2 | NAU934_R: ATTAGAGAAGCCAGGGAGGT |
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| Product Length | 212 |
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| Restriction Enzyme | EcoRI; XhoI |
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| Contact | Zhang, Tian-Zhen
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| Comment | Primer data obtained in 2007-05 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Image
| File Name | Legend |
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| 48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | (SM3 x SM12) x (X4133 x 8891), 4WC (2008) | AD_ch05_At.05 | N/A | 10.6 | NAU934 | View |
| 2 | Hai-7124 x Junmian-1, F2 (2008) part | AD_ch05_At.05 | N/A | 60 | NAU934 | View |
| 3 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch01_At.01 | N/A | 69.85 | NAU0934 | View |
| 4 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 320 | NAU0934 | View |
| 5 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch01_At.01 | N/A | 82.97 | NAU0934 | View |
| 6 | Yumian-1 x T586, RIL (2015) | AD_ch05_At.05 | N/A | 111.2 | NAU0934 | View |
| 7 | TM-1 x 3-79, RIL (2012) | AD_ch05_At.05 | N/A | 191.24 | NAU0934b | View |
| 8 | TM-1 x 3-79, RIL (2014) | AD_ch05_At.05 | N/A | 15.8 | NAU0934b | View |
| 9 | TM-1 x 3-79, RIL (2012) | AD_ch19_Dt.05 | N/A | 222.38 | NAU0934a | View |
| 10 | TM-1 x 3-79, RIL (2014) | AD_ch22_Dt.04 | N/A | 5 | NAU0934a | View |
| 11 | TM-1 x Hai-7124, BC1 (2007) | AD_ch05_At.05 | N/A | 199.4 | NAU934-180 | View |
| 12 | TM-1 x Hai-7124, BC1 (2008) | AD_ch05_At.05 | N/A | 186.59 | NAU934-180 | View |
| 13 | TM-1 x Hai-7124, BC1 (2012) | AD_ch05_At.05 | N/A | 19.7 | NAU934-180 | View |
| 14 | TM-1 x 3-79, RIL (2012.v3) | AD_ch05_At.05 | N/A | 15.8 | NAU0934b | View |
| 15 | TM-1 x 3-79, RIL (2012.v3) | AD_ch22_Dt.04 | N/A | 4.98 | NAU0934a | View |
Sequence
>NAU0934 ID=NAU0934; Name=NAU0934; organism=Gossypium arboreum; type=genetic_marker; length=212bp
TGCTTTCGTATCCTTTTTCCCTATAATTAACAGTGAGGCAAGCCAGATCC
TTCTCATTCTCTCTCTCTCTCTCTCTCTCNCNCTCTCTCTCTCTNATTAT
TAACAATAAACAATCCTGTAATTCAATCTCCCACCACAATCCATATAGTG
CGTCTAGCAAGAATGTTTACACAATGCAGTGGAAATGTTCACACCTCCCT
GGCTTCTCTAAT
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