NAU0858, NAU0858 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU0858
AliasNAU858
Genbank IDBQ414292
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(TTC)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU858_F: GACCCAAATGCCAGAATTAC
Primer 2NAU858_R: TTGGGGTTAGGTTTTTAGGG
Product Length191
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ414292
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:73398674..73398870 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:42696333..42696522 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:68745480..68745670 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_09chromosomeKI_09:32522452..32522649 -Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:77376016..77376205 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:7316366..7316579 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr6chromosomeAt_chr6:55655919..55656117 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:68307219..68307417 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:73068717..73068913 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:74653961..74654157 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:74838815..74839011 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:71478613..71478809 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5578supercontigscaffold5578:25836..26026 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5578supercontigscaffold5578:29716..29905 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold613supercontigscaffold613:117792..117981 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:43398104..43398293 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:69247953..69248143 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:45863511..45863700 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:70720174..70720364 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:70641793..70641980 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:73557493..73557680 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:44239257..44239445 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:70747064..70747252 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:76306276..76306472 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:75395482..75395674 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:78301051..78301241 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_09chromosomeB_09:62065914..62066108 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:43100954..43101145 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:35522027..35522315 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:29731817..29732091 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:44341520..44341711 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:30314560..30314818 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:10115859..10116042 +Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:63093617..63093809 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:121573299..121573488 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch09_At.09N/A212.9NAU858View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch09_At.09N/A85.11NAU0858View
3AD-genome wide Reference Map (2009)AD_ch09_At.09N/A195NAU0858View
4TM-1 x 3-79, RIL (2012)AD_ch23_Dt.09N/A68.29NAU0858View
5TM-1 x 3-79, RIL (2014)AD_ch23_Dt.09N/A81.1NAU0858View
6TM-1 x Hai-7124, BC1 (2007)AD_ch09_At.09N/A124NAU858-200View
7TM-1 x Hai-7124, BC1 (2008)AD_ch09_At.09N/A124.4NAU858-200View
8TM-1 x Hai-7124, BC1 (2005.v0)AD_ch09_At.09N/A235NAU858-200View
9TM-1 x Hai-7124, BC1 (2012)AD_ch09_At.09N/A122.6NAU858-200View
10TM-1 x 3-79, RIL (2012.v3)AD_ch23_Dt.09N/A81.13NAU0858View
Sequence
>NAU0858 ID=NAU0858; Name=NAU0858; organism=Gossypium arboreum; type=genetic_marker; length=191bp
GACCCAAATGCCAGAATTACAATAAAAGAGTAACCCCCCCCCCATTGAAC
TTTTTCACTGGTCTCCCCTAGTTAGCCCAGCCCCAACCAAAAGGAACAAA
AGCTGGTGGTTGGGTGCTGTCCCCATCACTGAAACTAGAAAATCCTTTAT
TTTTCTTCTTCTTCTTCTTCACCCTAAAAACCTAACCCCAA