MUSS0294, MUSS0294 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUSS0294
AliasMUSS294
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifCTA(5)
PCR ConditionAnnealing temperature: 55
Primer 1MUSS294_F: TTTTTCAGCGAGCTAGAGGC
Primer 2MUSS294_R: TTCAAAGCCCTGAGAAGAGG
Product Length282
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A02chromosomeA02:40921311..40921583 +
D03chromosomeD03:34356161..34356445 -
CM018203.1chromosomeCM018203.1:39488521..39488802 +
CM018217.1chromosomeCM018217.1:34990827..34991111 -
D5_02chromosomeD5_02:29049331..29049612 -
KI_2_4chromosomeKI_2_4:32525196..32525489 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:87151070..87151351 -
D10_02chromosomeD10_02:33555297..33555584 -
CM016615.1chromosomeCM016615.1:79497024..79497302 -
Dt_chr3chromosomeDt_chr3:17127931..17128215 +
At_chr3chromosomeAt_chr3:31764317..31764589 -
A02chromosomeA02:38132185..38132457 +
D03chromosomeD03:28484337..28484621 -
Ghir_A02chromosomeGhir_A02:42052023..42052295 +
Ghir_D03chromosomeGhir_D03:34414313..34414597 -
A02chromosomeA02:40336090..40336362 +
D03chromosomeD03:36020451..36020735 -
A02chromosomeA02:40583886..40584158 +
D03chromosomeD03:35352703..35352987 -
A02chromosomeA02:40102635..40102907 +
D03chromosomeD03:34778261..34778545 -
scaffold1857supercontigscaffold1857:376176..376460 +
scaffold4424supercontigscaffold4424:28868..29149 -
Gbar_A02chromosomeGbar_A02:40027372..40027653 +
Gbar_D03chromosomeGbar_D03:33404793..33405077 -
A02chromosomeA02:40445669..40445950 +
D03chromosomeD03:36010407..36010691 -
CM017611.1chromosomeCM017611.1:39595963..39596244 +
CM017625.1chromosomeCM017625.1:34391364..34391648 -
CM017637.1chromosomeCM017637.1:42248041..42248322 +
CM017651.1chromosomeCM017651.1:38312368..38312652 -
CM017689.1chromosomeCM017689.1:40248076..40248357 +
CM017703.1chromosomeCM017703.1:35788537..35788821 -
A02chromosomeA02:41464619..41464891 +
D03chromosomeD03:36417016..36417300 -
Chr02chromosomeChr02:24950324..24950605 +
Chr02chromosomeChr02:31135055..31135336 -
B_04chromosomeB_04:22559887..22560171 +
Chr03chromosomeChr03:32677708..32677989 -
chr03chromosomechr03:13603599..13603889 +
Chr_03chromosomeChr_03:10984544..10984831 +
Chr03chromosomeChr03:34444398..34444679 -
Chr03chromosomeChr03:11362810..11363091 +
Chr03chromosomeChr03:9862791..9863069 +
Chr03chromosomeChr03:12073860..12074144 +
E02chromosomeE02:61174238..61174522 -
F02chromosomeF02:54800788..54801069 -
Chr02chromosomeChr02:42675957..42676238 -
Chr03chromosomeMUSS0294:1..615 .
Chr03:17167533..17168150 +
scaffold214supercontigMUSS0294:1..615 .
scaffold214:535236..535853 +
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch02_At.02N/A111muss0294View
2LMY22 x LY343, RIL (2016)chr.2N/A51.3muss0294View
3TM-1 x 3-79, RIL (2006)AD_ch02_At.02N/A42.7MUSS294aView
4TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A64MUSS294aView
5TM-1 x 3-79, RIL (2006)AD_ch02_At.02N/A44.4MUSS294bView
6TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A62.89MUSS294View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A91.7MUSS294View
8TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A64.02MUSS294aView
Sequence
>MUSS0294 ID=MUSS0294; Name=MUSS0294; organism=Gossypium arboreum; type=genetic_marker; length=282bp
TTTTTCAGCGAGCTAGAGGCTCTTAATACAACTTCTGCCACTCTGTCAAA
ACCACCCATCACGCCAGCCACCTCCGCCAGCCTCGACGTGGCTCCCATTT
CGATTGGAATCCCTATGCCCATCTCTTCCGTCAGGATTCCACCTACTACT
ACTACTACAACTGCTATCCCAATGTCCTCGTCTATGTTACCCATGCCTGG
ATCCGCTCCACCACCTCCTCCTGCCACTCCATTTGGAATCAGCTTCTCTT
CTAATAGCTCTTCCTCTTCTCAGGGCTTTGAA