MUSB1227, MUSB1227 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB1227
Genbank IDDX521041
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX521041
Source TypeEST
Repeat Motif(TCTA)3
PCR ConditionAnnealing temperature: 50
Primer 1MUSB1227_F: ACACCATTGAAGCTGGCTGG
Primer 2MUSB1227_R: GGGCTCACCTGCGTTTAACC
Product Length253
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB1227
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX521041
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:59346008..59346260 -
A03chromosomeA03:93134670..93134921 -
CM018204.1chromosomeCM018204.1:91337390..91337645 +
CM018216.1chromosomeCM018216.1:55788551..55788803 -
D5_03chromosomeD5_03:11350430..11350689 +
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:119823697..119823957 -
D10_03chromosomeD10_03:11456165..11456425 +
CM016616.1chromosomeCM016616.1:19970731..19970991 +
Dt_chr5chromosomeDt_chr5:21967880..21968132 +
At_chr5chromosomeAt_chr5:40468974..40469225 -
D02chromosomeD02:56526584..56526836 -
A03chromosomeA03:85717474..85717725 -
Ghir_D02chromosomeGhir_D02:58353371..58353623 -
Ghir_A03chromosomeGhir_A03:97799306..97799560 -
D02chromosomeD02:58790040..58790292 -
A03chromosomeA03:96905044..96905295 -
D02chromosomeD02:59781934..59782186 -
A03chromosomeA03:94838131..94838382 -
D02chromosomeD02:56786725..56786977 -
A03chromosomeA03:90114247..90114498 -
At03chromosomeAt03:87398149..87398404 -
scaffold8281supercontigscaffold8281:88705..88957 +
scaffold9209supercontigscaffold9209:25554..25809 -
Gbar_D02chromosomeGbar_D02:56332175..56332427 -
Gbar_A03chromosomeGbar_A03:90578008..90578263 -
D02chromosomeD02:57650517..57650769 -
A03chromosomeA03:92784522..92784777 -
CM017624.1chromosomeCM017624.1:58662497..58662749 -
CM017612.1chromosomeCM017612.1:92611286..92611541 -
CM017650.1chromosomeCM017650.1:60141510..60141761 -
CM017638.1chromosomeCM017638.1:98835408..98835665 -
CM017702.1chromosomeCM017702.1:57263665..57263917 -
CM017690.1chromosomeCM017690.1:93042285..93042540 -
D02chromosomeD02:60724769..60725021 -
A03chromosomeA03:98404845..98405096 -
Chr03chromosomeChr03:15651549..15651806 +
Chr03chromosomeChr03:15794341..15794601 +
Chr03chromosomeChr03:51896075..51896333 -
B_03chromosomeB_03:14828255..14828515 +
Chr05chromosomeChr05:54652054..54652296 -
chr05chromosomechr05:40880439..40880804 -
Chr_05chromosomeChr_05:35666964..35667224 -
Chr05chromosomeChr05:56279222..56279483 -
Chr05chromosomeChr05:36032174..36032537 -
Chr05chromosomeChr05:30593321..30593577 -
Chr05chromosomeChr05:37429200..37429461 -
E03chromosomeE03:106380694..106380945 -
F03chromosomeF03:96188522..96188778 -
Chr03chromosomeChr03:28590636..28590891 +
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX521041DX521041Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch14_Dt.02N/A6.7MUSB1227View
2Yumian-1 x T586, RIL (2015)AD_ch03_At.03N/A57.3MUSB1227View
3Yumian-1 x T586, RIL (2009)AD_ch03_At.03N/A25.9MUSB1227/320yView
Sequence
>MUSB1227 ID=MUSB1227; Name=MUSB1227; organism=Gossypium hirsutum; type=genetic_marker; length=253bp
ACACCATTGAAGCTGGCTGGCAGGTTTCTTCGTTTTCCATTCCATTATTA
AAACTACATGCATTAATTAAAGATGCGAAGTATTTGTTTCTACACTTTGA
ATTCTATGCACTTATTTAGTTCACATTTAAGGCAATTATCACAGCTCAAC
TACCTCTCACTTTTTTATTTTTCTTAATATTTCTATCTATCTATTATAAA
TCATTATCATTTGGGTTGAATAAGGTTTTGTTTGGTTAAACGCAGGTGAG
CCC