MUSB1200, MUSB1200 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB1200
Genbank IDDX543602
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX543602.2
Source TypeEST
Repeat Motif(AT)5
PCR ConditionAnnealing temperature: 50
Primer 1MUSB1200_F: GCCACTGTCCTAGACTGAGTCC
Primer 2MUSB1200_R: CCATCTATCCGAATCCCTACGAGG
Product Length337
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB1200
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX543602
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_358supercontigscaffold_358:3820..4156 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:55944721..55945057 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:85339035..85339371 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:86851765..86852101 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:52661700..52662036 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:60527993..60528329 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:61091151..61091487 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:59181726..59182062 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:55472742..55473078 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2093supercontigscaffold2093:395031..395367 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:55871065..55871401 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:58098066..58098402 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:57186897..57187233 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:61587446..61587782 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:56888040..56888376 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:61831065..61831401 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:51497481..51497817 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX543602.2DX543602.2Gossypium hirsutumsequence_feature


Sequence
>MUSB1200 ID=MUSB1200; Name=MUSB1200; organism=Gossypium hirsutum; type=genetic_marker; length=337bp
GCCACTGTCCTAGACTGAGTCCTATACAAAATCAGATACGATGTCAATGT
CGCAGACATGGTCTTACGTAAAATAGAAGTCGATGTTAATGTCTCATATG
TGGTCTTACACGATAACACATATCAGAATCCTATGTTATGGCATATGTAT
CCTAACTATTCCTAAGGTTCGTACGACGCTTTTCGGACGTCAGAACTTTG
TCGATACTTTCTCGGATGGCATATATATATAGTTTGAATATTCATTCATT
ACAATTCAATATCATATGCATAATAATAATTCAATTCAAACTCGTTTATT
GTATATTGACTTACCTCGTAGGGATTCGGATAGATGG