MUSB1055, MUSB1055 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB1055
Genbank IDDX556078
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX556078
Source TypeEST
Repeat Motif(AATT)3
PCR ConditionAnnealing temperature: 50
Primer 1MUSB1055_F: CTAGGGTCAAATTAGGGCTGTCAC
Primer 2MUSB1055_R: GTGAGCCTGATGGGCTATTGG
Product Length296
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB1055
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX556078
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:85470796..85471091 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
scaffold_1016supercontigscaffold_1016:14792..15087 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A02chromosomeA02:71991955..71992487 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:70355415..70355710 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:45778491..45778786 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr3chromosomeAt_chr3:66395812..66396344 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:19048983..19049278 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold480_A02supercontigscaffold480_A02:30656..31188 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold2920_A11supercontigscaffold2920_A11:575437..575732 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:90285311..90285842 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:77628576..77628871 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:90674101..90674633 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:75961150..75961445 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:88234480..88235012 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:74900300..74900595 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:86840391..86840923 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:72702440..72702735 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6164supercontigscaffold6164:20777..21072 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:72741101..72741396 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:71335304..71335599 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:86779685..86780225 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:73866916..73867211 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:79123337..79123632 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:70984300..70984595 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:90199260..90199792 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:77494258..77494553 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:80140984..80141279 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:77840923..77841218 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX556078DX556078Gossypium hirsutumsequence_feature


Sequence
>MUSB1055 ID=MUSB1055; Name=MUSB1055; organism=Gossypium hirsutum; type=genetic_marker; length=296bp
CTAGGGTCAAATTAGGGCTGTCACATTACCACACCTTAACCTTATGACTC
ATCCACGATCACAATTAATTAATTAAGTTTTATGTCAATTAAACAGTTAC
CAGATACTAGGCCCAAAACCCCTTACAGAGCCCAAACAAGTCTACATACA
TGCATATGGCCCACTAGGCCCGAATCACATTCGTATGGCCCATTAGGCCC
AAATCACATTCATATACATGCTTTCATATAATTTCCATCACTTAACATCA
AGTTGCAATTTTGCCTATTATGGGCCCAATAGCCCATCAGGCTCAC