MUSB1010, MUSB1010 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB1010
Genbank IDDX544793
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX544793
Source TypeEST
Repeat Motif(GAG)5
PCR ConditionAnnealing temperature: 50
Primer 1MUSB1010_F: AGCTTCAAAGAAAGTGGGAGTTTCC
Primer 2MUSB1010_R: TGTGACCCGGCTTCTTGC
Product Length230
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB1010
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX544793
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:46943855..46944083 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:45456635..45456864 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:48457035..48457258 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:15923747..15923976 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:43275232..43275461 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:45736120..45736349 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:45468897..45469126 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:47051493..47051722 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:46090513..46090742 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:42524041..42524270 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2636supercontigscaffold2636:99568..99797 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:44141071..44141300 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:45635621..45635850 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:45952101..45952330 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:47620584..47620813 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:45780195..45780424 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:47590895..47591124 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:48700792..48701021 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:49068229..49068452 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:64269919..64270166 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX544793DX544793Gossypium hirsutumsequence_feature


Sequence
>MUSB1010 ID=MUSB1010; Name=MUSB1010; organism=Gossypium hirsutum; type=genetic_marker; length=230bp
AGCTTCAAAGAAAGTGGGAGTTTCCTTCAAATAAATAACTTGTAAAAAGG
ATGAAGACTCTTTTAATGATGAGGAGGAGGAGGAGATGACAAAGTTTGCA
AAGAAATTCAAAAAGTTCATGAAGTTCAATAATGTTAAAAGATTCCCAAG
AAGAGACATCATCAAGGGTGAACTAAGTAAGAAGGAAAATGACCCAATCA
TTTGCTATTAAAGCAAGAAGCCGGGTCACA