MUSB1001, MUSB1001 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB1001
Genbank IDDX560128
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX560128
Source TypeEST
Repeat Motif(GA)6
PCR ConditionAnnealing temperature: 50
Primer 1MUSB1001_F: ACATCAACCATGCCATGCCA
Primer 2MUSB1001_R: GCTCACATGTTGAAGCCGATGC
Product Length293
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB1001
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX560128
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX560128DX560128Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch11_At.11N/A89.32MUSB1001View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch11_At.11N/A44.52MUSB1001View
3AD-genome wide Reference Map (2009)AD_ch08_At.08N/A183MUSB1001View
4TM-1 x 3-79, RIL (2012)AD_ch08_At.08N/A48.56MUSB1001View
5TM-1 x 3-79, RIL (2006)AD_ch08_At.08N/A38MUSB1001View
6TM-1 x 3-79, RIL (2014)AD_ch08_At.08N/A58.2MUSB1001View
7TM-1 x 3-79, RIL (2012.v3)AD_ch08_At.08N/A58.16MUSB1001View
Sequence
>MUSB1001 ID=MUSB1001; Name=MUSB1001; organism=Gossypium hirsutum; type=genetic_marker; length=293bp
ACATCAACCATGCCATGCCATTTAAAGGNGCNAGNAATTGAGANGAGAGA
GAGAGAAAGCCCTTTAAAGGGAATGGGATGGGGCTCGAGATGTGAGAGAG
TGTAAGAAAATGGTTGGAAAATGGGATCGGCAATTCACCCTTTTGTGTAA
ACCTTGTCAGATATCCTTTAATATTCCAAATGGGTTCACGAGTTATTTTA
AAGCTTAGAATGTCTGGGACATGGGATCGGCATTAAGATAAGAGATAGTG
TAAGGCATTGTCTGGGACATGGCATCGGCTTCAACATGTGAGC