MUSB0868, MUSB0868 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0868
Genbank IDDX530047
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX530047
Source TypeEST
Repeat Motif(TGAGC)3
PCR ConditionAnnealing temperature: 50
Primer 1MUSB0868_F: CTTCCCAGTGTACCCAGAATCC
Primer 2MUSB0868_R: GGTCAAGCTGAATTTGAGGCTTCG
Product Length494
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0868
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX530047
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:106068902..106069393 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:103499363..103499862 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:133410450..133410949 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1147.1supercontigscaffold1147.1:148098..148589 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:97800634..97801125 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:110455639..110456130 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:109127269..109127760 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:107563409..107563900 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:102838847..102839338 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:99317233..99317732 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3340supercontigscaffold3340:108303..108802 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:102698374..102698873 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:105102511..105103010 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017638.1chromosomeCM017638.1:111577299..111577798 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:105575399..105575898 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:111130947..111131438 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:2449804..2450303 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:2295868..2296367 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX530047DX530047Gossypium hirsutumsequence_feature


Sequence
>MUSB0868 ID=MUSB0868; Name=MUSB0868; organism=Gossypium hirsutum; type=genetic_marker; length=494bp
CTTCCCAGTGTACCCAGAATCCTCCTTTGGATTACTTTGTGTACTGGTCT
ATCAAGCTAAAAAAGTTTTTTGTTGAAGATAGGAAAGCTTAATCAGTGAG
AATGATTAGGGGTGTATTTGAGCTGAGCTGAGCCGAGCTCAAGCTTGACC
TCGAAAATCAGTGCTCAATACTCTGCTCGAGCTTTGTCGAACATCTATTT
TTAAGCTCGAGCTTGGCCCAAGATATAAATTTTTGTATTCAAGTTCAAAT
CAAACTTAGTGTTAATAATGGATATATATTATGGGCAATAATGTAGTTTA
ATAATATAAATATATTAAAAATGAAAGCTTGATAAGGCTTGTAAGTTGTT
TGAGCTGAGTATAACTGAGCTCAAATTCAGATTGTCCAATAGTTCGAGCT
TGGCTTGATAATTATTGAGTCGAGTTCAAGTTTTTCTTCGAACATAAGTA
GTTTGGGAAGCTGAGTATTACGAAGCCTCAAATTCAGCTTGACC