MUSB0859, MUSB0859 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0859
Genbank IDDX520418
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX520418
Source TypeEST
Repeat Motif(AT)5
PCR ConditionAnnealing temperature: 50
Primer 1MUSB0859_F: GCGGAAGCATTAAGTAGGCATAAGC
Primer 2MUSB0859_R: GGACATGGCATCGGCCTAG
Product Length322
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0859
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX520418
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM017610.1chromosomeCM017610.1:54100751..54101070 +
CM017636.1chromosomeCM017636.1:57505741..57506060 +
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX520418DX520418Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2006)AD_ch07_At.07N/A13.3MUSB0859View
2TM-1 x 3-79, RIL (2012)AD_ch07_At.07N/A112.55MUSB0859View
3TM-1 x 3-79, RIL (2014)AD_ch07_At.07N/A24.8MUSB0859View
4TM-1 x 3-79, RIL (2012.v3)AD_ch07_At.07N/A24.8MUSB0859View
Sequence
>MUSB0859 ID=MUSB0859; Name=MUSB0859; organism=Gossypium hirsutum; type=genetic_marker; length=322bp
GCGGAAGCATTAAGTAGGCATAAGCACAACTTACTCATCACTAACCAATA
CAATTCACATAGCATATATATATTGGGCTCACGTCTCATACATTTCAAAT
AGGTACCTGTACTACTCAAAACATGGTTATACTTTTCTCGTTTAACTTAA
ACTGAACTCTGACCTTTAAAGCATTTGGAAAGGTATCGGATATTCACTAC
ACCTCAAACATAGGGATGACATGTCCCAGACATGGTCTTACACTGACTCA
ACCATCAAGTCGATCCCATGTTTCAGACATGGTCTTACACTGACTATCGA
AATCTAGGCCGATGCCATGTCC