MUSB0631, MUSB0631 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0631
Genbank IDDX822935
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822935
Source TypeEST
Repeat Motif(AT)5
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0631_F: CAAATGGGGCTTGATAATCG
Primer 2MUSB0631_R: GGTGAGTGGGAAAATTGAGG
Product Length238
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0631
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822935
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:47326600..47326836 +
D07chromosomeD07:40793283..40793518 -
CM018221.1chromosomeCM018221.1:45943414..45943650 +
CM018220.1chromosomeCM018220.1:26821559..26821792 +
CM018221.1chromosomeCM018221.1:38797447..38797681 -
D5_06chromosomeD5_06:26875093..26875326 +
D10_07chromosomeD10_07:17047846..17048079 +
At_chr7chromosomeAt_chr7:14333511..14333747 +
Dt_chr1chromosomeDt_chr1:74032694..74032929 -
D07chromosomeD07:44597507..44597743 +
D07chromosomeD07:38744490..38744725 -
Ghir_D07chromosomeGhir_D07:49005608..49005844 +
Ghir_D06chromosomeGhir_D06:28199926..28200159 +
Ghir_D07chromosomeGhir_D07:39421577..39421812 -
D07chromosomeD07:48243713..48243949 +
D07chromosomeD07:39353606..39353841 -
D07chromosomeD07:48351094..48351330 +
D07chromosomeD07:39667151..39667386 -
D07chromosomeD07:44885175..44885411 +
D07chromosomeD07:38644119..38644354 +
Dt07chromosomeDt07:42969227..42969461 -
scaffold2483supercontigscaffold2483:60143..60379 -
scaffold2180supercontigscaffold2180:87365..87598 -
scaffold20255supercontigscaffold20255:58517..58751 -
Gbar_D07chromosomeGbar_D07:46410631..46410867 +
Gbar_D06chromosomeGbar_D06:27028562..27028795 +
Gbar_D07chromosomeGbar_D07:38922803..38923037 -
D07chromosomeD07:47105553..47105789 +
D06chromosomeD06:26702389..26702622 +
D07chromosomeD07:39862420..39862654 -
CM017629.1chromosomeCM017629.1:46475760..46476000 +
CM017628.1chromosomeCM017628.1:27722441..27722674 +
CM017655.1chromosomeCM017655.1:47564924..47565160 +
CM017707.1chromosomeCM017707.1:46970764..46970998 +
CM017706.1chromosomeCM017706.1:27051720..27051952 +
CM017707.1chromosomeCM017707.1:39384369..39384603 -
D07chromosomeD07:48896832..48897068 +
D07chromosomeD07:40115272..40115507 -
Chr06chromosomeChr06:26702992..26703225 +
Chr10chromosomeChr10:27370677..27370910 +
Chr_10chromosomeChr_10:20663009..20663376 +
Chr_01chromosomeChr_01:26838876..26839109 -
Chr10chromosomeChr10:28354308..28354547 +
Chr01chromosomeChr01:22522246..22522494 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822935DX822935Gossypium hirsutumsequence_feature


Sequence
>MUSB0631 ID=MUSB0631; Name=MUSB0631; organism=Gossypium hirsutum; type=genetic_marker; length=238bp
CAAATGGGGCTTGATAATCGTCGTACGTCGTTGGATTTACATCGTTTCAT
AACATGAAAAATTGCATAATAACATATATATATTGATTCATCTTCAAAAA
AATCATACATTANACATTCAATTTAATCAACCATTAGATGATAATCATTC
ATACGAACTTACCAGGCTAAATTGCAGAAATGTTAAAGTACAGAAGCATT
TTGGTAATTTTTCATTCTCCTCAATTTTCCCACTCACC