MUSB0576, MUSB0576 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0576
Genbank IDDX822882
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822882
Source TypeEST
Repeat Motif(AATT)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0576_F: CACATAAGGTGTTGGACCATGT
Primer 2MUSB0576_R: TTGAAATGAGTAGGTAGAGGACCA
Product Length308
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0576
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822882
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D11chromosomeD11:1730885..1731194 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018225.1chromosomeCM018225.1:1551898..1552207 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_11chromosomeD5_11:64219941..64220237 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Dt_chr9chromosomeDt_chr9:40883640..40883949 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D11chromosomeD11:1622287..1622596 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D11chromosomeGhir_D11:1645762..1646071 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D11chromosomeD11:1592953..1593262 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D11chromosomeD11:1636472..1636781 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D11chromosomeD11:1650478..1650787 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold7684supercontigscaffold7684:39672..39981 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D11chromosomeGbar_D11:1600506..1600815 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D11chromosomeD11:1614218..1614527 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017633.1chromosomeCM017633.1:1529507..1529816 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017659.1chromosomeCM017659.1:1620265..1620574 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017711.1chromosomeCM017711.1:1576113..1576422 +Gossypium darwinii (AD5) genome HGS_v1.1
D11chromosomeD11:1605255..1605564 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822882DX822882Gossypium hirsutumsequence_feature


Sequence
>MUSB0576 ID=MUSB0576; Name=MUSB0576; organism=Gossypium hirsutum; type=genetic_marker; length=308bp
CACATAAGGTGTTGGACCATGTACTCTTTCTATATTGATAATAATGTTCA
TACCAATCAAATTAAACTCAATTCGTATGCCTCATAAATTAATTAATTAA
AAAGTGTAGTGAAATTCACAAATACTTATTTTTCAAGATTAATTTTAGCA
CCTCANAGTAGGTTTTAATATTAAATGTTATGGTAGAAGTATCGTCTATT
TTGGTCTATTGAATTTTAAGATTTTGTCCAACACTCATATTTTAACATCA
ACTCTAATATACAATATTGGTTAAATATCACTTTTGGTCCTCTACCTACT
CATTTCAA