MUSB0495, MUSB0495 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0495
Genbank IDDX822808
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822808
Source TypeEST
Repeat Motif(AT)8
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0495_F: TTTGCAACGCATGCATTAAG
Primer 2MUSB0495_R: GAACAGGTGGCTGATCAAAA
Product Length178
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0495
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822808
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:1412243..1412420 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:1274434..1274623 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:101590321..101590502 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr8chromosomeAt_chr8:42584894..42585071 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:1245668..1245845 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:1395546..1395723 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:1416152..1416329 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:1399273..1399450 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6256supercontigscaffold6256:138096..138285 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:1241220..1241409 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017647.1chromosomeCM017647.1:1454454..1454631 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
A12chromosomeA12:1411078..1411255 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:1330639..1330824 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:1359957..1360139 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:1207771..1207970 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr08chromosomeChr08:875360..875552 -Gossypium gossypioides (D6) genome ISU_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822808DX822808Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch12_At.12N/A2.28MUSB0495View
2TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A2.3MUSB0495View
3TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A2.28MUSB0495View
Sequence
>MUSB0495 ID=MUSB0495; Name=MUSB0495; organism=Gossypium hirsutum; type=genetic_marker; length=178bp
TTTGCAACGCATGCATTAAGAATTAGGATACATATGATATATATATATAT
ATAATTAAGGGTAAACTATATTGTTAGTTATTTAATTATTGATAAGTTTT
TTTATCATTTAATTATGAAAAGACACGAAATGATTATTTAAGTTTTTAAT
TTTATCTTTTTTGATCAGCCACCTGTTC