MUSB0479, MUSB0479 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0479
Genbank IDDX822792
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822792
Source TypeEST
Repeat Motif(TTAA)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0479_F: AATTAGCTCGGGTGGAAAGC
Primer 2MUSB0479_R: TGTGTCTCAACCATGTGTGC
Product Length239
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0479
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822792
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:40648323..40648562 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:58548284..58548523 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:75071710..75071953 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold4475.1supercontigscaffold4475.1:47722..47961 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2633_A10supercontigscaffold2633_A10:190656..190895 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:61642542..61642781 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:63575164..63575403 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:61619574..61619813 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:57299775..57300014 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9930supercontigscaffold9930:63577..63816 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:58853911..58854150 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:60425272..60425511 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:59533418..59533657 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:64502630..64502869 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:61478693..61478932 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:64619819..64620058 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:25259344..25259583 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:56097269..56097801 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:52486447..52486690 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822792DX822792Gossypium hirsutumsequence_feature


Sequence
>MUSB0479 ID=MUSB0479; Name=MUSB0479; organism=Gossypium hirsutum; type=genetic_marker; length=239bp
AATTAGCTCGGGTGGAAAGCATCTTTGTCTATTTATAAGACAATTTTAAT
CAGAGTCTAGAGATAGCACACTATCATAGGTTACAAAATGGCATGTATTT
CTAGACTCCACATATGCTACGCTAAGCCCGTGTGCTAGGCCGTGCGGTTA
ATTAATTAATTTTGAATTTAGGTACAGGTTTCACACGGCCAAGACACATA
CCCATGTTCTTTTCGTGTAGCACACATGGTTGAGACACA