MUSB0322, MUSB0322 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0322
Genbank IDDX822648
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822648
Source TypeEST
Repeat Motif(TCAT)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0322_F: TACTTCCTGTCCCCGATTCC
Primer 2MUSB0322_R: TCTGAGCGACTAGAGGTAATGC
Product Length179
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0322
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822648
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:21166336..21166514 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:21044897..21045075 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00024036_CRI-A2_v1.0.a1chromosometig00024036_CRI-A2_v1.0.a1:25329..25507 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00024036_CRI-A2_v1.0.a1chromosometig00024036_CRI-A2_v1.0.a1:22893..23071 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00024036_CRI-A2_v1.0.a1chromosometig00024036_CRI-A2_v1.0.a1:20458..20636 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr4chromosomeAt_chr4:33896006..33896184 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:20911007..20911185 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:21805027..21805205 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:21659738..21659916 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:22032583..22032761 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:21873177..21873355 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5587supercontigscaffold5587:294210..294388 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:21496416..21496594 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:20973576..20973754 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:21203155..21203333 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:22278246..22278424 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:21174851..21175029 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:22682185..22682363 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:23008611..23008789 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:23433939..23434117 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:23431503..23431681 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:23436374..23436552 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F08chromosomeF08:19707501..19707701 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822648DX822648Gossypium hirsutumsequence_feature


Sequence
>MUSB0322 ID=MUSB0322; Name=MUSB0322; organism=Gossypium hirsutum; type=genetic_marker; length=179bp
TACTTCCTGTCCCCGATTCCAACCTTTTGTTGATGGTTGATGGTACCATG
GTAAGTATCATAATCACAGTTAGTGGGGTCATGTACGACTTTAGCCAATG
GGATCATTCATTCATATATTTTTTTTTTTAATTCTATCATTACTGCTAGT
TGATCTGGCATTACCTCTAGTCGCTCAGA