MUSB0194, MUSB0194 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0194
Genbank IDDX561002
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX561002
Source TypeEST
Repeat Motif(TA)10
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0194_F: CCCATTCAAGGGACATAATCC
Primer 2MUSB0194_R: TGAGCTTTGAAACCGAAAGG
Product Length179
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0194
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX561002
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A02chromosomeA02:51712106..51712281 +
At_chr3chromosomeAt_chr3:74927837..74928012 +
A02chromosomeA02:48507013..48507188 +
Ghir_A02chromosomeGhir_A02:77964167..77964342 -
A02chromosomeA02:78146853..78147028 -
A02chromosomeA02:76016804..76016979 -
A02chromosomeA02:74788974..74789151 -
A02chromosomeA02:77726042..77726217 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX561002DX561002Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2006)AD_ch02_At.02N/A50.6musb0194View
2TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A56.57musb0194View
3AD-genome wide Reference Map (2009)AD_ch02_At.02N/A71musb0194View
4TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A57.5musb0194View
5TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A57.52MUSB0194View
Sequence
>MUSB0194 ID=MUSB0194; Name=MUSB0194; organism=Gossypium hirsutum; type=genetic_marker; length=179bp
CCCATTCAAGGGACATAATCCATACATTTAAACTATATCAAAATTATACT
ATCATATTCAAATTAAACTTCAATTTTATGATTTAACATTTATCTTATAT
TTTCACATATAACTTATTTATGGCTGTATATATATATATATATATAAATT
ATCAAGGTACCTTTCGGTTTCAAAGCTCA