MUSB0169, MUSB0169 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0169
Genbank IDDX527573
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX527573.2
Source TypeEST
Repeat Motif(TCTT)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0169_F: CAACGACAACCCAAATTGC
Primer 2MUSB0169_R: CGGCCAAGTATGAAATGAGG
Product Length200
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0169
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX527573
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A01chromosomeA01:60317702..60317901 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018202.1chromosomeCM018202.1:58662781..58662980 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:69315639..69315838 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
At_chr11chromosomeAt_chr11:79567533..79567732 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A01chromosomeA01:58373126..58373325 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A01chromosomeGhir_A01:62150255..62150454 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A01chromosomeA01:61147595..61147794 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A01chromosomeA01:60863117..60863316 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A01chromosomeA01:59219579..59219778 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold519supercontigscaffold519:192014..192213 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold519supercontigscaffold519:187997..188196 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold519supercontigscaffold519:179521..179720 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A01chromosomeGbar_A01:58757254..58757453 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A01chromosomeA01:59452445..59452644 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017636.1chromosomeCM017636.1:64221323..64221521 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017688.1chromosomeCM017688.1:57986868..57987067 +Gossypium darwinii (AD5) genome HGS_v1.1
A01chromosomeA01:62720730..62720929 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr01chromosomeChr01:38041797..38041996 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr01chromosomeChr01:71075222..71075421 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr03chromosomeChr03:13813823..13814024 -Gossypium gossypioides (D6) genome ISU_v1
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX527573.2DX527573.2Gossypium hirsutumsequence_feature


Sequence
>MUSB0169 ID=MUSB0169; Name=MUSB0169; organism=Gossypium hirsutum; type=genetic_marker; length=200bp
CAACGACAACCCAAATTGCATCTTTCTTTCTTGGAGAAAATGGTAACCCT
GATACAAAGTCCATCGTGACTCGCTCCCATTTCTATTCTGGTATCATCAC
AGGTCGTAATAAACCAGAAGGTACTTGATGTTCAGCTTTAACTTGCTGAC
ATACTAAACATCTCTACGAAGTTAGAAATTCCTCATTTCATACTTGGCCG