MUSB0073, MUSB0073 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0073
Genbank IDDX542897
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX542897
Source TypeEST
Repeat Motif(TCCT)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0073_F: CTTCCAAAACCAACATGAAGC
Primer 2MUSB0073_R: GTGAGGGAGGAAGGGAACC
Product Length107
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0073
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX542897
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:55205986..55206150 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX542897DX542897Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch08_At.08N/A118musb0073View
2AD-genome wide Reference Map (2009)AD_ch03_At.03N/A53musb0073View
3TM-1 x 3-79, RIL (2006)AD_ch03_At.03N/A46.7MUSB0073aView
4TM-1 x 3-79, RIL (2012)AD_ch08_At.08N/A61.12MUSB0073bView
5TM-1 x 3-79, RIL (2006)AD_ch08_At.08N/A50.6MUSB0073bView
6TM-1 x 3-79, RIL (2014)AD_ch08_At.08N/A71.3MUSB0073bView
7TM-1 x 3-79, RIL (2012)AD_ch17_Dt.03N/A0MUSB0073fView
8TM-1 x 3-79, RIL (2014)AD_ch17_Dt.03N/A16.4MUSB0073fView
9TM-1 x 3-79, RIL (2012.v3)AD_ch08_At.08N/A71.29MUSB0073bView
10TM-1 x 3-79, RIL (2012.v3)AD_ch17_Dt.03N/A16.42MUSB0073fView
Sequence
>MUSB0073 ID=MUSB0073; Name=MUSB0073; organism=Gossypium hirsutum; type=genetic_marker; length=107bp
CTTCCAAAACCAACATGAAGCAAGAACTCCTTCCTTCCTCCTTAAAATTT
CCGGCCAGGATGGCCCAAGGAAGGAACCTTTTTTTTTTGGTTCCCTTCCT
CCCTCAC