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Marker Overview
| Name | MUCS0084 |
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| Alias | MUCS084
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| Genbank ID | N/A |
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| Type | SSR |
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| Species | Gossypium arboreum |
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| Germplasm | AKA 8401 |
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| Source Type | EST |
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| Repeat Motif | GA(4)GT(6) |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | MUCS084_F: atctttacgtatttccgggacc |
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| Primer 2 | MUCS084_R: GGGTTTGAAAAGGGAATAGAGG |
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| Product Length | 243 |
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| Contact | Ulloa, Mauricio
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| Comment | Primer data obtained in 2007-11 |
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Alignments
The following features are aligned
| Feature Name | Type | Location | Analysis | Reference |
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| Chr01_CRI-A2_v1.0.a1 | chromosome | Chr01_CRI-A2_v1.0.a1:39361927..39362169 - | Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1 | n/a |
| D10_01 | chromosome | D10_01:38706308..38706556 - | Gossypium turneri (D10) genome NSF_v1_a2 | n/a |
| Dt_chr2 | chromosome | Dt_chr2:35885631..35885886 - | Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1 | n/a |
| CM017636.1 | chromosome | CM017636.1:33352099..33352340 + | Gossypium mustelinum (AD4) genome JGI_v1.1 | n/a |
| Chr01 | chromosome | Chr01:39422120..39422362 - | Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1 | n/a |
| B_01 | chromosome | B_01:31375084..31375320 + | Gossypium anomalum (B1) genome NSF_v1 | n/a |
| Chr02 | chromosome | Chr02:22452398..22452640 + | Gossypium thurberi (D1-5) genome CRI_v1 | n/a |
| Chr_02 | chromosome | Chr_02:16303614..16303855 + | Gossypium harknessii (D2-2) genome ISU_v1 | n/a |
| Chr02 | chromosome | Chr02:19488092..19488336 + | Gossypium aridum (D4) genome ISU_v1 | n/a |
| Chr02 | chromosome | Chr02:14216821..14217063 + | Gossypium gossypioides (D6) genome ISU_v1 | n/a |
| Chr02 | chromosome | Chr02:17692057..17692301 + | Gossypium lobatum (D7) genome ISU_v1 | n/a |
| A01 | chromosome | A01:32955925..32956178 . | Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1 | Wang F, Zhang J, Chen Y, Zhang C, Gong J, Song Z, Zhou J, Wang J, Zhao C, Jiao M, Liu A, Du Z, Yuan Y, Fan S, Zhang J. Identification of candidate genes for key fibre‐related QTLs and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions. Plant biotechnology journal. 2020; 18(3):707-720. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Emian-22 x 3-79, BC1 (2011) | AD_ch15_Dt.01 | N/A | 105.59 | MUCS084 | View |
| 2 | LMY22 x LY343, RIL (2020) | A01 | N/A | 132.66 | MUCS084 | View |
| 3 | AD-genome wide Reference Map (2009) | AD_ch15_Dt.01 | N/A | 89 | mucs0084 | View |
| 4 | TM-1 x 3-79, RIL (2006) | AD_ch01_At.01 | N/A | 19.1 | MUCS084a | View |
| 5 | TM-1 x 3-79, RIL (2012) | AD_ch15_Dt.01 | N/A | 64.22 | MUCS084a | View |
| 6 | TM-1 x 3-79, RIL (2014) | AD_ch15_Dt.01 | N/A | 55.4 | MUCS084a | View |
| 7 | 901-001 x sGK156, F2 (2019) | AD_ch15_Dt.01 | N/A | 124.92 | MUCS084a | View |
| 8 | TM-1 x 3-79, RIL (2006) | AD_ch15_Dt.01 | N/A | 0 | MUCS084b | View |
| 9 | TM-1 x 3-79, RIL (2012) | AD_ch01_At.01 | N/A | 61.91 | MUCS084b | View |
| 10 | TM-1 x 3-79, RIL (2014) | AD_ch01_At.01 | N/A | 82.5 | MUCS084b | View |
| 11 | 901-001 x sGK156, F2 (2019) | AD_ch15_Dt.01 | N/A | 127.52 | MUCS084b | View |
| 12 | TM-1 x 3-79, RIL (2012.v3) | AD_ch01_At.01 | N/A | 82.47 | MUCS084b | View |
| 13 | TM-1 x 3-79, RIL (2012.v3) | AD_ch15_Dt.01 | N/A | 55.41 | MUCS084a | View |
Sequence
>MUCS0084 ID=MUCS0084; Name=MUCS0084; organism=Gossypium arboreum; type=genetic_marker; length=243bp
ATCTTTACGTATTTCCGGGACCGAATCAAACCCAGCAGGCAGCAGGCAGC
AGGCAGCAGGCAAAGAGAGAGAGTGTGTGTGTGTTTCTCACCTTACCTTA
AAATATATTAACAATTTTTTTAAAATGACGGTTTCAATATTTTATAACAT
TCCATCACCCTCCTCATCTTCCCTTTCTTCTTTTTCTTGTTCATCTTCTT
GCTTCTTAAGCATTGCCTCCTCCTCTATTCCCTTTTCAAACCC
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