JESPR0190, JESPR0190 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0190
AliasJESPR190
Genbank IDAF351428
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351428.1
Source Typegenomic
Repeat Motif(CTT)9
Primer 1JESPR0190_F: GCCCGCCATCTTTGAGGATCCG
Primer 2JESPR0190_R: GGCAAAACTTGACAATTTTCTCGGC
PolymorphismP_ JESPR0190
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351428
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:64113828..64113972 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:108104889..108105022 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:61232471..61232615 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:106266592..106266725 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:3519549..3519705 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:4240457..4240590 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:3533477..3533619 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:139965883..139966013 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4561.1supercontigscaffold4561.1:3206..3339 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1048.1supercontigscaffold1048.1:124772..124922 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:60138687..60138831 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:97231872..97232005 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:63904393..63904537 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:111075845..111075978 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:63261480..63261624 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:111545348..111545481 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:62404498..62404648 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:111184754..111184887 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:60361620..60361764 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold19666supercontigscaffold19666:82189..82333 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold19666supercontigscaffold19666:77807..77951 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold16242supercontigscaffold16242:177018..177151 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:61400145..61400289 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:106544042..106544175 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:62393696..62393846 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:107929369..107929502 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:61347488..61347634 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:107221331..107221464 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:64042028..64042172 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:114916591..114916724 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:62723453..62723602 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:109505369..109505502 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:64075082..64075226 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:114360508..114360641 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:124089089..124089221 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:120019369..120019502 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:58632996..58633152 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:4705905..4706037 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:60781199..60781333 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:62233551..62233710 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:46018198..46018330 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:33776178..33776310 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:44746270..44746402 -Gossypium lobatum (D7) genome ISU_v1n/a
F10chromosomeF10:91361390..91361528 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351428.1AF351428.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch20_Dt.10N/A242.1JESPR190View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch20_Dt.10N/A140.54JESPR190View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch20_Dt.10N/A85.74JESPR190View
4DH962 x Jinmian-6, F2 (2009)AD_ch20_Dt.10N/A43.5JESPR190View
5DH962 x Jinmian-6, F2 (2009)AD_ch20_Dt.10N/A43.5JESPR190View
6DH962 X Ji Mian 5, F2 (2015)AD_ch20_Dt.10N/A95.3JESPR190View
7TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch20_Dt.10N/A20.3JESPR190View
8DH962 x Ji Mian 5, RIL (2015)AD_ch20_Dt.10N/A19.1JESPR190View
9CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch20_Dt.10N/A34JESPR190View
10LMY28 x XLZ24, RIL (2018)AD_ch20_Dt.10N/A15.86JESPR190View
11Monsanto SSR Bin Map, (2009)AD_ch20_Dt.10N/A21JESPR190View
12AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A24jespr0190View
13TM-1 x Hai-7124, BC1 (2008)AD_ch20_Dt.10N/A97.85JESPR190-150View
14TM-1 x Hai-7124, BC1 (2012)AD_ch20_Dt.10N/A16.2JESPR190-150View
Sequence
>JESPR0190 ID=JESPR0190; Name=JESPR0190; organism=Gossypium hirsutum; type=genetic_marker; length=145bp
GCCCGCCATCTTTGAGGATCCGAAATCACTGAAACAGGTAATCCCTTCTT
CTTCTTCTTCTTCTTCTTCTTTTCTGGTTTATTATTATTTGGATCGTTCT
GCTTATTTGCTTGTTTGGTTGCCGAGAAAATTGTCAAGTTTTGCC