JESPR0053, JESPR0053 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0053
AliasJESPR053
Genbank IDAF351292
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351292.1
Source Typegenomic
Repeat Motif(GAA)9
Primer 1JESPR0053_F: GCCAATGGGACTATATACCGGTG
Primer 2JESPR0053_R: CCATGTCCCACGCCAGATTG
PolymorphismP_ JESPR0053
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351292
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:10477941..10478115 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:11423966..11424123 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:9799789..9799960 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:11134840..11134997 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:9292217..9292370 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:11184402..11184559 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:51185703..51185871 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:15878180..15878339 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:60874650..60874824 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:45923531..45923688 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:9745327..9745501 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:10242274..10242431 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:10215685..10215859 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:11315955..11316112 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:9954503..9954677 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:10964349..10964506 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:10043569..10043743 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:11346482..11346639 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:11488592..11488766 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:11549779..11549936 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:8956202..8956359 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At05chromosomeAt05:8954592..8954749 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold33060supercontigscaffold33060:34520..34677 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold33060supercontigscaffold33060:32910..33067 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2152supercontigscaffold2152:253504..253675 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:10149330..10149501 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:10718695..10718852 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:10190811..10190982 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:11334085..11334242 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:10085231..10085399 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:11207469..11207626 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:10357640..10357802 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:11409304..11409461 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:10038178..10038340 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:11071565..11071722 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:10277616..10277790 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:11564639..11564796 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:11937335..11937492 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:11023262..11023419 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:9335339..9335492 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:75005162..75005318 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:9692105..9692273 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:8852785..8852953 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:8677976..8678145 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:8753241..8753409 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:7357686..7357863 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:8529995..8530163 +Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:12022198..12022363 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr13chromosomeChr13:186388016..186388176 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr09chromosomeJESPR0053:8..255 .
Chr09:9269002..9269233 +		n/a
Chr9chromosomeJESPR0053:8..255 .
Chr9:14891705..14891936 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351292.1AF351292.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch19_Dt.05N/A167.53JESPR53View
2Xinluzao-1 x Hai-7124, F2 (2008)AD_ch19_Dt.05N/A344.1JESPR53View
3Emian-22 x 3-79, BC1 (2015)AD_ch19_Dt.05N/A171JESPR53View
4Handan-208 x Pima-90, F2:3 (2007)AD_ch19_Dt.05N/A83JESPR53*View
5TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A50.24JESPR053View
6TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A135JESPR053View
7Monsanto SSR Bin Map, (2009)AD_ch19_Dt.05N/A181JESPR053View
8AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A88jespr0053View
9TM-1 x Hai-7124, BC1 (2008)AD_ch19_Dt.05N/A51.66JESPR53-255View
10TM-1 x Hai-7124, BC1 (2012)AD_ch19_Dt.05N/A140.5JESPR53-255View
11TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A134.97JESPR053View
12PD 94042 x (AD)4-08, F2 (2016)AD_ch19_Dt.05N/A73.5JESPR53View
Sequence
>JESPR0053 ID=JESPR0053; Name=JESPR0053; organism=Gossypium hirsutum; type=genetic_marker; length=173bp
GCCAATGGGACTATATACCGGTGGAAATCTTCATTTCAAGAAACTTTAAC
TTTGAAGAAGAAGAAGAAGAAGAAGAAGAATTGTAAGAATTGTCATATCA
GGTGAGGCGGCTGAGAAAATCTTCAGCTTAGAAAGTGAAAAATCTTGGCA
ATGCAATCTGGCGTGGGACATGG