HAU3145, HAU3145 (genetic_marker) gossypium spp

Marker Overview
NameHAU3145
Genbank IDGR708722
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AAG)5
PCR ConditionAnnealing temperature: 56.4
Primer 1HAU3145_F: GCAAACTACGTCAGAAACCCCC
Primer 2HAU3145_R: TCGAGTGGATCAACGGCGTC
Product Length182
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGR716158
DB:genbankGR708722
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:89327793..89327973 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:98809983..98810164 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:1161541..1161731 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A02chromosomeA02:82340399..82340579 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:106982935..106983115 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:107183966..107184146 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:104643175..104643355 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:103231894..103232075 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At02chromosomeAt02:88479737..88479918 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At02chromosomeAt02:88473340..88473521 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17336supercontigscaffold17336:25303..25484 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17336supercontigscaffold17336:18906..19087 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A02chromosomeGbar_A02:99124895..99125076 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:101059775..101059956 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:104029373..104029554 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:108794402..108794582 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:101207379..101207560 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:107103119..107103299 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:91827938..91828129 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:101441721..101441911 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A128.3HAU3145View
Sequence
>HAU3145 ID=HAU3145; Name=HAU3145; organism=Gossypium spp.; type=genetic_marker; length=182bp
GCAAACTACGTCAGAAACCCCCCAGCCCCCGAAAAAAAAAAAGCCGTACA
AAAAGAAGAAGAAGAAGAACAAGCAATTATGACTTTGGGCTTGATCAATG
CGAACCCAGTAGTTCACGCCAAGAAAGAACGAGTCGTTCGTAACGAAGAT
CCTCACGGTGACGACGCCGTTGATCCACTCGA