HAU2453, HAU2453 (genetic_marker) gossypium spp

Marker Overview
NameHAU2453
Genbank IDES800076
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AG)11
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU2453_F: AGCCGGGGAGGGACATTGAT
Primer 2HAU2453_R: GATTAACTGCCCGGCTGCCT
Product Length258
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEV489820
DB:genbankEV491954
DB:genbankES800076
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:9087435..9087692 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:8629681..8629937 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:8552640..8552893 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:31383348..31383610 -Gossypioides kirkii genome ISU_v3n/a
D10_07chromosomeD10_07:45390556..45390815 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D07chromosomeD07:8693580..8693837 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:8939337..8939594 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:8579433..8579690 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:8765942..8766199 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold24071supercontigscaffold24071:94551..94807 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:8959622..8959878 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:8756881..8757137 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:9052694..9052951 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:9072388..9072646 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:8879432..8879688 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:9026225..9026482 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:10683218..10683479 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:45012561..45012814 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:8723602..8723862 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:8103271..8103530 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:8651213..8651465 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:7215495..7215750 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:7420652..7420909 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:81378637..81378889 -Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:9368874..9369141 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch16_Dt.07N/A28.6HAU2453View
2Yumian-1 x 7235, RIL (2015)AD_ch16_Dt.07N/A48HAU2453View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch07_At.07N/A24.4HAU2453View
Sequence
>HAU2453 ID=HAU2453; Name=HAU2453; organism=Gossypium spp.; type=genetic_marker; length=258bp
AGCCGGGGAGGGACATTGATGATTGGAAGATAAGTTTTTTTTTTTCCTCA
TGAAGTTTTGTATGTTTTGGCTGCCAACTGATAAGAGAGAGAGAGAGAGA
GAGAGTTGCTGATAGCCATAGAAAGGTTTGAAATCACATTGAACGCCTTA
TTGCAGGATGGTGGCCCGTGACTTTTTAGAGTTGTTTATTATAAAACCAT
GACGTTTTTTTTTATTGGTGGTTTATAATGAAACCGATAGGCAGCCGGGC
AGTTAATC