HAU1470, HAU1470 (genetic_marker) gossypium spp

Marker Overview
NameHAU1470
AliasTA40148_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AAAT)6
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU1470_F: CAATCGACTCTCCCAGAAAT
Primer 2HAU1470_R: GCGTTCGGTCTTAGAGACAT
Product Length119
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:91507920..91508034 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:43617294..43617409 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:86788852..86788970 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:94982559..94982677 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:21166032..21166147 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:45651803..45651922 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr4chromosomeDt_chr4:11118433..11118548 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold141.1supercontigscaffold141.1:1100799..1100917 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:43292903..43293018 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:72439516..72439634 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:46137915..46138030 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:90379734..90379852 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:47131424..47131539 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:93602386..93602504 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:46037288..46037403 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:93161688..93161806 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:43302752..43302867 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:89985967..89986085 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt08chromosomeDt08:43778581..43778696 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At08chromosomeAt08:75701359..75701477 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6123supercontigscaffold6123:47440..47555 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1827supercontigscaffold1827:222659..222777 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:43555552..43555667 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:87727738..87727856 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:45646816..45646931 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:88582298..88582416 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:45082513..45082628 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:87334613..87334731 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:46737640..46737755 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:96793466..96793584 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:44218625..44218740 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:88075194..88075304 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:46611587..46611702 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:94681600..94681718 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:98528646..98528764 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:99055303..99055421 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:40645143..40645258 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:73429425..73429537 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:42168209..42168323 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:30754588..30754702 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:28057423..28057538 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:44558046..44558160 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:27469789..27469903 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:22924052..22924165 -Gossypium gossypioides (D6) genome ISU_v1n/a
E08chromosomeE08:86892738..86892850 -Gossypium stocksii (E1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A47.9HAU1470View
2GX1135 x GX100-2, F2 (2013)AD_ch24_Dt.08N/A163.6HAU1470View
3GX1135 x GX100-2, RIL (2016)AD_ch08_At.08N/A53.5HAU1470bView
4GX1135 x GX100-2, RIL (2016)AD_ch08_At.08N/A54.4HAU1470aView
Sequence
>HAU1470 ID=HAU1470; Name=HAU1470; organism=Gossypium spp.; type=genetic_marker; length=119bp
CAATCGACTCTCCCAGAAATAGTACATCGACTGTGAATTAATCGGCGATT
CCATCAGATTGAAAGTAAAATAAATAAATAAATAAATAAAGAATCGACGA
TGTCTCTAAGACCGAACGC