JESPR0172, JESPR0172 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0172
AliasJESPR172
Genbank IDAF351410
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351410.1
Source Typegenomic
Repeat Motif(GAA)5
Primer 1JESPR0172_F: CAATCTGAAAAACCATAAGACC
Primer 2JESPR0172_R: ACCATTGAAACACCATGTC
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351410
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:39530640..39530751 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:40059879..40059999 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:34007627..34007744 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold5041.1supercontigscaffold5041.1:31197..31308 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr3chromosomeDt_chr3:12013179..12013290 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:33509121..33509232 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:39500180..39500291 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:41018231..41018342 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:40432866..40432977 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:75111642..75111753 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:39863838..39863949 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9418supercontigscaffold9418:216600..216708 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold329supercontigscaffold329:159565..159685 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:38480553..38480673 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:71629426..71629534 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:41028992..41029112 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:39457175..39457289 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:43380499..43380613 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:40990513..40990630 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:71623126..71623240 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:41531008..41531119 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:84888022..84888133 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:36092460..36092574 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr03chromosomechr03:24239798..24239909 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:20774327..20774447 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:18116474..18116583 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeJESPR0172:1..441 .
Chr03:33510080..33510523 -		n/a
scaffold199supercontigJESPR0172:1..441 .
scaffold199:1011925..1012368 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351410.1AF351410.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch17_Dt.03N/A72.6JESP172View
2AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A115jespr0172View
3TM-1 x Hai-7124, BC1 (2008)AD_ch17_Dt.03N/A32.19JESPR172-120View
4TM-1 x Hai-7124, BC1 (2012)AD_ch17_Dt.03N/A72.6JESPR172-120View
5CCRI-35 x Yumian-1, RIL (2015)AD_ch07_At.07N/A23.7JESPR172View
6CCRI-35 x Yumian-1, RIL (2017)AD_ch07_At.07N/A72.57JESPR172View
Sequence
>JESPR0172 ID=JESPR0172; Name=JESPR0172; organism=Gossypium hirsutum; type=genetic_marker; length=112bp
CAATCTGAAAAACCATAAGACCCCGCCAATAATGGATGAAGGTTACAAAT
GAAGAGAGCCAAGAAAAAGAAGAAGAAGAAGAANAAAATCAAAGACATGG
TGTTTCAATGGT