HAU1024, HAU1024 (genetic_marker) gossypium spp

Marker Overview


Name	HAU1024
Alias	TA24319_3635
Genbank ID	N/A
Type	SSR
Species	Gossypium spp.
Source Type	EST
Repeat Motif	(CT)11
PCR Condition	Annealing temperature: 56.9
Primer 1	HAU1024_F: GCACGAGGTGGTTCTATCTT
Primer 2	HAU1024_R: GATTTGGGAACTTTGATTGG
Product Length	151
Publication	[view all]
Comment	Primer data obtained in 2012

Publications


Year	Publication
2011	Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense. BMC genomics. 2011; 12:15

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Emian-22 x 3-79, BC1 (2011)	AD_ch17_Dt.03	N/A	80.94	HAU1024	View
2	Yumian-1 x T586, RIL (2015)	AD_ch17_Dt.03	N/A	75.2	HAU1024	View
3	Yumian-1 x 7235, RIL (2015)	AD_ch17_Dt.03	N/A	37.1	HAU1024	View
4	TM-1 x Hai-7124, BC1 (2012)	AD_ch17_Dt.03	N/A	65.1	HAU1024-145	View

Sequence

>HAU1024 ID=HAU1024; Name=HAU1024; organism=Gossypium spp.; type=genetic_marker; length=151bp
GCACGAGGTGGTTCTATCTTACAGAGGAAACTCCAGAATCTGTTTTCACC
CTCCCACGCGTCCCGTATAGCCGTCTCTCCAAGCGCGCTCTCTCTCTCTC
TCTCTCTCTAGATATATATATCTGCGTACAACCAATCAAAGTTCCCAAAT
C

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HAU1024, HAU1024 (genetic_marker) gossypium spp