HAU0719, HAU0719 (genetic_marker) gossypium spp

Marker Overview
NameHAU0719
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TTTTTA)4
PCR ConditionAnnealing temperature: 56.1
Primer 1HAU0719_F: TTGCTAGATCTCTTGCGATT
Primer 2HAU0719_R: AATGCAGCTATGATGGACAA
Product Length223
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:60548233..60548893 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:59555334..59556003 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:52966789..52967454 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:6689237..6689912 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold3755.1supercontigscaffold3755.1:56372..57032 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:58170095..58170755 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:59524319..59524977 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:60257366..60258026 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:60196089..60196748 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:58919120..58919780 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt05chromosomeDt05:58502483..58503152 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18829supercontigscaffold18829:105354..106023 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:60879618..60880287 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:62350653..62351322 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:59186900..59187571 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:61708197..61708867 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:60418490..60419159 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:62617595..62618255 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:54481062..54481729 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:54588318..54588966 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:51455047..51455829 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Sequence
>HAU0719 ID=HAU0719; Name=HAU0719; organism=Gossypium spp.; type=genetic_marker; length=223bp
TTGCTAGATCTCTTGCGATTTAAATTCCTCTTTTTTATTTTTATCTTTAT
TTTTATCTCCTTTCAAAAAAAAAATTCTCTTGAAAAAAATCTGATTCCGA
TTGATTAAAATCAGTCATGATTTCTTCAAGCAAGATCAAATCCGTCGATT
TTTACAGGAAAATCCCTAGAGATTTAACAGAGGCATCTTTATCCGGTGCA
GGGTTGTCCATCATAGCTGCATT