HAU0698, HAU0698 (genetic_marker) gossypium spp

Marker Overview
NameHAU0698
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TAT)6
PCR ConditionAnnealing temperature: 56.5
Primer 1HAU0698_F: TGATTTGTGAAGCTGGTGAC
Primer 2HAU0698_R: TGTTGTTGATAATGGGGAAC
Product Length174
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:226106..226277 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:275245..275417 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:220497..220668 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:249189..249361 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:221785..221958 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:103814..103986 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:60240718..60240889 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:471564..471735 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:69055476..69055647 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:70592442..70592614 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:227031..227202 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:254487..254659 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:351250..351421 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:305048..305220 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:219189..219360 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:284045..284217 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:222496..222667 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:287480..287652 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:222563..222734 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:430034..430206 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4318supercontigscaffold4318:60034..60206 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4318supercontigscaffold4318:62902..63074 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15300supercontigscaffold15300:150458..150629 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15300supercontigscaffold15300:148826..148997 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:238481..238652 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:188142..188314 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:223027..223198 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:266528..266700 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:285117..285288 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:294105..294277 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:242980..243151 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:311311..311483 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:237689..237860 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:257955..258127 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:220994..221165 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:312021..312193 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:352071..352243 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:78382..78554 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:222447..222620 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:85663313..85663480 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:289203..289374 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:144619..144790 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:178244..178415 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:269260..269431 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:157856..158028 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:156062..156233 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:176682..176854 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:455385..455556 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:286443..286614 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:199206488..199206659 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0698 ID=HAU0698; Name=HAU0698; organism=Gossypium spp.; type=genetic_marker; length=174bp
TGATTTGTGAAGCTGGTGACTGCGCCCGTATTTTTTGATTTTTTTTTAAC
TTTCCTTTTTTTTTAATTTGATTCATTTTTTCCTTTTTACTTTGACTTTG
TGTTTGCAGCATTTATAAACTGAATTTCAGAAACATATTATTATCATTAT
TATTGTTCCCCATTATCAACAACA