HAU0698, HAU0698 (genetic_marker) gossypium spp

Marker Overview
NameHAU0698
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TAT)6
PCR ConditionAnnealing temperature: 56.5
Primer 1HAU0698_F: TGATTTGTGAAGCTGGTGAC
Primer 2HAU0698_R: TGTTGTTGATAATGGGGAAC
Product Length174
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:226106..226277 -
A05chromosomeA05:275245..275417 -
CM018219.1chromosomeCM018219.1:220497..220668 -
CM018206.1chromosomeCM018206.1:249189..249361 -
D5_05chromosomeD5_05:221785..221958 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:103814..103986 -
D10_05chromosomeD10_05:60240718..60240889 +
CM016626.1chromosomeCM016626.1:471564..471735 -
Dt_chr9chromosomeDt_chr9:69055476..69055647 +
Dt_chr9chromosomeDt_chr9:70592442..70592614 +
D05chromosomeD05:227031..227202 -
A05chromosomeA05:254487..254659 -
Ghir_D05chromosomeGhir_D05:351250..351421 -
Ghir_A05chromosomeGhir_A05:305048..305220 -
D05chromosomeD05:219189..219360 -
A05chromosomeA05:284045..284217 -
D05chromosomeD05:222496..222667 -
A05chromosomeA05:287480..287652 -
D05chromosomeD05:222563..222734 -
A05chromosomeA05:430034..430206 -
scaffold4318supercontigscaffold4318:60034..60206 +
scaffold4318supercontigscaffold4318:62902..63074 +
scaffold15300supercontigscaffold15300:150458..150629 +
scaffold15300supercontigscaffold15300:148826..148997 +
Gbar_D05chromosomeGbar_D05:238481..238652 -
Gbar_A05chromosomeGbar_A05:188142..188314 -
D05chromosomeD05:223027..223198 -
A05chromosomeA05:266528..266700 -
CM017627.1chromosomeCM017627.1:285117..285288 -
CM017614.1chromosomeCM017614.1:294105..294277 -
CM017653.1chromosomeCM017653.1:242980..243151 -
CM017640.1chromosomeCM017640.1:311311..311483 -
CM017705.1chromosomeCM017705.1:237689..237860 -
CM017692.1chromosomeCM017692.1:257955..258127 -
D05chromosomeD05:220994..221165 -
A05chromosomeA05:312021..312193 -
Chr05chromosomeChr05:352071..352243 -
Chr05chromosomeChr05:78382..78554 -
Chr05chromosomeChr05:222447..222620 -
B_05chromosomeB_05:85663313..85663480 +
Chr09chromosomeChr09:289203..289374 -
chr09chromosomechr09:144619..144790 -
Chr_09chromosomeChr_09:178244..178415 -
Chr09chromosomeChr09:269260..269431 -
Chr09chromosomeChr09:157856..158028 -
Chr09chromosomeChr09:156062..156233 -
Chr09chromosomeChr09:176682..176854 -
E05chromosomeE05:455385..455556 -
F05chromosomeF05:286443..286614 -
Chr13chromosomeChr13:199206488..199206659 +
Sequence
>HAU0698 ID=HAU0698; Name=HAU0698; organism=Gossypium spp.; type=genetic_marker; length=174bp
TGATTTGTGAAGCTGGTGACTGCGCCCGTATTTTTTGATTTTTTTTTAAC
TTTCCTTTTTTTTTAATTTGATTCATTTTTTCCTTTTTACTTTGACTTTG
TGTTTGCAGCATTTATAAACTGAATTTCAGAAACATATTATTATCATTAT
TATTGTTCCCCATTATCAACAACA