HAU0694, HAU0694 (genetic_marker) gossypium spp

Marker Overview
NameHAU0694
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GAAATA)4
PCR ConditionAnnealing temperature: 56.8
Primer 1HAU0694_F: CCTTGCAGACAAGCTCATAA
Primer 2HAU0694_R: AGAATATCATCGGACCCAAA
Product Length209
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:64117912..64118112 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:60468667..60468867 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:6445323..6445529 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr5chromosomeDt_chr5:14904534..14904734 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:61326256..61326456 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:63095759..63095959 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:63341154..63341354 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:64471377..64471577 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:61547880..61548080 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt02chromosomeDt02:63835364..63835564 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9920supercontigscaffold9920:157870..158070 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:61038201..61038401 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:62360303..62360503 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:63314372..63314572 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:65010189..65010390 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:61939563..61939763 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:65448547..65448747 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:56651943..56652150 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:59521407..59521602 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_05chromosomeChr_05:38807748..38807957 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:61270197..61270406 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:40803607..40803803 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>HAU0694 ID=HAU0694; Name=HAU0694; organism=Gossypium spp.; type=genetic_marker; length=209bp
CCTTGCAGACAAGCTCATAAAACCTTCCATTTATTTTTTAAAAAAAAATT
GTTATCTCTTCCACGAAATAGAAATAGGAATAGAAATAGAGAGAGAAAAG
TAATTTTACCGTTCGGATCTGTGTTTCTGGAGGAAATGGCATCTGGATCA
TCGGGTCGGGGAAACACGGGTAATTCCAAAGGGTTCGATTTTGGGTCCGA
TGATATTCT