HAU0681, HAU0681 (genetic_marker) gossypium spp

Marker Overview
NameHAU0681
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AT)10
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0681_F: ACTCGGAAGACATGGATGAT
Primer 2HAU0681_R: ATCCACAGCCATTTCAAGTT
Product Length176
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:44110395..44110570 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:72579931..72580110 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:41879566..41879741 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:67983501..67983680 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:35491340..35491515 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:31875415..31875595 +Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:75168048..75168227 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:8123809..8123984 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:12517850..12518030 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr6chromosomeAt_chr6:54397491..54397670 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr6chromosomeDt_chr6:8745151..8745326 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:41875483..41875658 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:67501136..67501315 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:43936868..43937043 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:72251212..72251391 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:43480942..43481117 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:73868084..73868263 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:43698575..43698750 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:74020150..74020329 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:41769846..41770021 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:70630627..70630806 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At09chromosomeAt09:70153746..70153925 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At09chromosomeAt09:70151732..70151911 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21154supercontigscaffold21154:53545..53724 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21154supercontigscaffold21154:51531..51710 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10166supercontigscaffold10166:31139..31314 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:42562489..42562664 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:68416730..68416909 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:45043685..45043860 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:69912066..69912245 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:42798123..42798298 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:69833419..69833598 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:44195688..44195863 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:72754111..72754290 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:43366883..43367058 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:69917988..69918167 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:45393112..45393287 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:75487458..75487637 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:74524093..74524272 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:77461160..77461339 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:41704715..41704890 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:61267577..61267752 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:42257042..42257217 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:34775642..34775817 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:29112556..29112731 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:43518627..43518802 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:32050744..32050920 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06_2024666chromosomeChr06_2024666:5426..5601 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06_5236864chromosomeChr06_5236864:2327..2503 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:11301697..11301871 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:62221833..62222008 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:120342116..120342291 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0681 ID=HAU0681; Name=HAU0681; organism=Gossypium spp.; type=genetic_marker; length=176bp
ACTCGGAAGACATGGATGATGATTCACCCAAGAAGAAGAATGGAAACATG
TTAAAAAAGATTGGTGTGTTATGGAAGAAAGGTCAGAAGTAGCAGCAAAT
GCATCAGAGGTTGCAATGCATATATAATATAATATATATTTCTGCTCTAA
AAGTAAAACTTGAAATGGCTGTGGAT