HAU0681, HAU0681 (genetic_marker) gossypium spp

Marker Overview
NameHAU0681
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AT)10
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0681_F: ACTCGGAAGACATGGATGAT
Primer 2HAU0681_R: ATCCACAGCCATTTCAAGTT
Product Length176
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:44110395..44110570 +
A09chromosomeA09:72579931..72580110 +
CM018223.1chromosomeCM018223.1:41879566..41879741 +
CM018210.1chromosomeCM018210.1:67983501..67983680 +
D5_09chromosomeD5_09:35491340..35491515 +
KI_09chromosomeKI_09:31875415..31875595 +
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:75168048..75168227 +
D10_09chromosomeD10_09:8123809..8123984 -
CM016622.1chromosomeCM016622.1:12517850..12518030 -
At_chr6chromosomeAt_chr6:54397491..54397670 +
Dt_chr6chromosomeDt_chr6:8745151..8745326 -
D09chromosomeD09:41875483..41875658 +
A09chromosomeA09:67501136..67501315 +
Ghir_D09chromosomeGhir_D09:43936868..43937043 +
Ghir_A09chromosomeGhir_A09:72251212..72251391 +
D09chromosomeD09:43480942..43481117 +
A09chromosomeA09:73868084..73868263 +
D09chromosomeD09:43698575..43698750 +
A09chromosomeA09:74020150..74020329 +
D09chromosomeD09:41769846..41770021 +
A09chromosomeA09:70630627..70630806 +
At09chromosomeAt09:70153746..70153925 +
At09chromosomeAt09:70151732..70151911 +
scaffold21154supercontigscaffold21154:53545..53724 +
scaffold21154supercontigscaffold21154:51531..51710 +
scaffold10166supercontigscaffold10166:31139..31314 +
Gbar_D09chromosomeGbar_D09:42562489..42562664 +
Gbar_A09chromosomeGbar_A09:68416730..68416909 +
D09chromosomeD09:45043685..45043860 +
A09chromosomeA09:69912066..69912245 +
CM017631.1chromosomeCM017631.1:42798123..42798298 +
CM017618.1chromosomeCM017618.1:69833419..69833598 +
CM017657.1chromosomeCM017657.1:44195688..44195863 +
CM017644.1chromosomeCM017644.1:72754111..72754290 +
CM017709.1chromosomeCM017709.1:43366883..43367058 +
CM017696.1chromosomeCM017696.1:69917988..69918167 +
D09chromosomeD09:45393112..45393287 +
A09chromosomeA09:75487458..75487637 +
Chr09chromosomeChr09:74524093..74524272 +
Chr09chromosomeChr09:77461160..77461339 +
Chr09chromosomeChr09:41704715..41704890 +
B_09chromosomeB_09:61267577..61267752 +
Chr06chromosomeChr06:42257042..42257217 +
chr06chromosomechr06:34775642..34775817 +
Chr_06chromosomeChr_06:29112556..29112731 +
Chr06chromosomeChr06:43518627..43518802 +
Chr06chromosomeChr06:32050744..32050920 +
Chr06_2024666chromosomeChr06_2024666:5426..5601 -
Chr06_5236864chromosomeChr06_5236864:2327..2503 +
E09chromosomeE09:11301697..11301871 -
F09chromosomeF09:62221833..62222008 +
Chr09chromosomeChr09:120342116..120342291 +
Sequence
>HAU0681 ID=HAU0681; Name=HAU0681; organism=Gossypium spp.; type=genetic_marker; length=176bp
ACTCGGAAGACATGGATGATGATTCACCCAAGAAGAAGAATGGAAACATG
TTAAAAAAGATTGGTGTGTTATGGAAGAAAGGTCAGAAGTAGCAGCAAAT
GCATCAGAGGTTGCAATGCATATATAATATAATATATATTTCTGCTCTAA
AAGTAAAACTTGAAATGGCTGTGGAT