HAU0664, HAU0664 (genetic_marker) gossypium spp

Marker Overview
NameHAU0664
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TCTG)4
PCR ConditionAnnealing temperature: 55.3
Primer 1HAU0664_F: GCATCAAATGAGCATCCA
Primer 2HAU0664_R: ACCGATGGTAAATTAAATGG
Product Length300
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:50580529..50581078 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:47702073..47702623 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:41036829..41037379 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:2852695..2853245 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold3642.1supercontigscaffold3642.1:39834..40383 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:47951267..47951816 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:49945113..49945662 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:49271974..49272523 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:49692735..49693284 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:47787611..47788160 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold41786supercontigscaffold41786:8525..9075 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:48581562..48582112 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:50948092..50948642 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:48695421..48695971 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:50184985..50185535 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:49355450..49356000 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:51533732..51534281 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:47259269..47259817 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:67559378..67559935 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:48037148..48037698 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:39886733..39887390 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:33474546..33475069 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:49130588..49131138 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:37078274..37078825 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:28088791..28089340 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:34400118..34400669 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>HAU0664 ID=HAU0664; Name=HAU0664; organism=Gossypium spp.; type=genetic_marker; length=300bp
GCATCAAATGAGCATCCATTATTGATATTGATAATTAAGATACACATGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTTACTCATGTTAATAAAA
CCAAAGCACTCTCTGTCTGTCAGTCTGTGTTGTCCTCTTCATTACAATTC
TCTTGTTTTACTCCTGTTATGAATATGACCAATATCACATTAAATAATTT
TGGTGAAATATTGTATATAATGTAGTAATTGAGGGTTTTCAATGATTTTT
TTTCATGAGTTTTTAATTTATAGTATAGGTCCATTTAATTTACCATCGGT