HAU0591, HAU0591 (genetic_marker) gossypium spp

Marker Overview
NameHAU0591
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TA)8
PCR ConditionAnnealing temperature: 57.2
Primer 1HAU0591_F: AAACATTTAGGGGGCTTTTT
Primer 2HAU0591_R: TGATACAATCAGGCAAACACA
Product Length130
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:67133901..67134030 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_06chromosomeD5_06:59431698..59431827 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:1504047..1504178 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold35801supercontigscaffold35801:147..276 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D06chromosomeD06:62761315..62761444 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:65390450..65390579 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:63995266..63995395 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:64759326..64759455 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:61698565..61698694 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold14656supercontigscaffold14656:62516..62641 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14656supercontigscaffold14656:60852..60977 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:61577439..61577564 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017628.1chromosomeCM017628.1:61815386..61815515 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:65429517..65429644 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D06chromosomeD06:65228371..65228500 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:59032195..59032324 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:61658886..61659014 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_10chromosomeChr_10:42279149..42279276 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:63298542..63298681 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:40494896..40495027 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:113004377..113004509 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch25_Dt.06N/A15.24HAU0591View
2Emian-22 x 3-79, BC1 (2015)AD_ch25_Dt.06N/A140.9HAU0591View
Sequence
>HAU0591 ID=HAU0591; Name=HAU0591; organism=Gossypium spp.; type=genetic_marker; length=130bp
AAACATTTAGGGGGCTTTTTAAGGGGTTTATCCTTTTTTTCTCTTTTTTT
TAGAAGGGAGATTGCTTTGCGCCCCGCTTTTATTTATATATATATATATA
GCATACATATGTGTTTGCCTGATTGTATCA