HAU0582, HAU0582 (genetic_marker) gossypium spp

Marker Overview
NameHAU0582
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TTTTCT)5
PCR ConditionAnnealing temperature: 55.0
Primer 1HAU0582_F: GCTCTCGATGGACAGAGTTT
Primer 2HAU0582_R: GATGGTTTTCATAACAATGG
Product Length262
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:6961658..6962111 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:7218834..7219287 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:6372069..6372555 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:47486031..47486508 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:40143641..40144094 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Ghir_A07chromosomeGhir_A07:7283233..7283686 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:6351522..6352026 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:6593741..6594245 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:7321663..7322116 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At07chromosomeAt07:6732309..6732762 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12091supercontigscaffold12091:108420..108873 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:6650993..6651490 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:7188591..7189044 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:7030341..7030794 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:6833868..6834372 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017707.1chromosomeCM017707.1:6665959..6666449 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:7313353..7313806 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:7369606..7370059 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:47206578..47207065 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:6513712..6514190 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:6484154..6484631 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:5364805..5365275 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:4600474..4600936 -Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>HAU0582 ID=HAU0582; Name=HAU0582; organism=Gossypium spp.; type=genetic_marker; length=262bp
GCTCTCGATGGACAGAGTTTGGATGGAAGAGCAATAAGAGTAAATGTTGC
AGAGGAAAGACCAAGGCGAGGATTCTTTTGATGTTGAAATGATTTAGATA
CATGATCTACTGCTGTTTGCTTTTCTTTTTCTTTTTCTTTTTTCTTTTTT
CATTTTTCTAAAATAACTTGTCCTATTTTTCCCTTTTTTTAAGGTTCAAT
TTTTAATTTTATTATATTTTGTAAGGAATAAAATATATGTATCCATTGTT
ATGAAAACCATC