HAU0579, HAU0579 (genetic_marker) gossypium spp

Marker Overview
NameHAU0579
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GGTGAG)5
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0579_F: AGTGGCTGGGCAGTTTATAG
Primer 2HAU0579_R: CCCTTTCTATCACTCGCACT
Product Length281
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A04chromosomeA04:80343090..80344257 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:78911621..78912787 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_2_4chromosomeKI_2_4:1751526..1752581 -Gossypioides kirkii genome ISU_v3n/a
D10_04chromosomeD10_04:50368204..50369303 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:125417175..125418340 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:68133832..68134999 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:61044271..61045438 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:82985656..82986823 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:85691502..85692669 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:78905004..78906171 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:79795747..79796914 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:81373623..81374788 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:79918628..79919795 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:87019154..87020321 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:107048738..107049902 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
E04chromosomeE04:103629605..103630725 +Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>HAU0579 ID=HAU0579; Name=HAU0579; organism=Gossypium spp.; type=genetic_marker; length=281bp
AGTGGCTGGGCAGTTTATAGTTGGAGTTGCAAATGTTATAGCCTTGCTTT
TGGGGTTTGTTTTCTTAGTGAGATTTTGGGGGCTGAGCAAGCTGAAAAGA
GCAGCTTCAATGGGGTTCCCAAAGGAAAACTGTGTAAACAAAAATGGAAA
TGGTGAGGGTGAGAGTGAGAGTGAGGGTGTTGGGACTGCAGAAATTATCA
TAGTCGGCGCTGGTGTTGCCGGTGCTGCTCTTGCCTATTCTCTTGGAAAG
GATGGACGTCGAGTGCGAGTGATAGAAAGGG