HAU0579, HAU0579 (genetic_marker) gossypium spp

Marker Overview


Name	HAU0579
Genbank ID	N/A
Type	SSR
Species	Gossypium spp.
Source Type	EST
Repeat Motif	(GGTGAG)5
PCR Condition	Annealing temperature: 57.0
Primer 1	HAU0579_F: AGTGGCTGGGCAGTTTATAG
Primer 2	HAU0579_R: CCCTTTCTATCACTCGCACT
Product Length	281
Publication	[view all]
Comment	Primer data obtained in 2012

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A04	chromosome	A04:80343090..80344257 +
CM018205.1	chromosome	CM018205.1:78911621..78912787 +
KI_2_4	chromosome	KI_2_4:1751526..1752581 -
D10_04	chromosome	D10_04:50368204..50369303 +
CM016617.1	chromosome	CM016617.1:125417175..125418340 +
At_chr8	chromosome	At_chr8:68133832..68134999 -
A04	chromosome	A04:61044271..61045438 +
Ghir_A04	chromosome	Ghir_A04:82985656..82986823 +
A04	chromosome	A04:85691502..85692669 +
A04	chromosome	A04:78905004..78906171 +
A04	chromosome	A04:79795747..79796914 +
CM017613.1	chromosome	CM017613.1:81373623..81374788 +
CM017691.1	chromosome	CM017691.1:79918628..79919795 +
A04	chromosome	A04:87019154..87020321 +
Chr04	chromosome	Chr04:107048738..107049902 +
E04	chromosome	E04:103629605..103630725 +

Publications


Year	Publication
2011	Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense. BMC genomics. 2011; 12:15

Sequence

>HAU0579 ID=HAU0579; Name=HAU0579; organism=Gossypium spp.; type=genetic_marker; length=281bp
AGTGGCTGGGCAGTTTATAGTTGGAGTTGCAAATGTTATAGCCTTGCTTT
TGGGGTTTGTTTTCTTAGTGAGATTTTGGGGGCTGAGCAAGCTGAAAAGA
GCAGCTTCAATGGGGTTCCCAAAGGAAAACTGTGTAAACAAAAATGGAAA
TGGTGAGGGTGAGAGTGAGAGTGAGGGTGTTGGGACTGCAGAAATTATCA
TAGTCGGCGCTGGTGTTGCCGGTGCTGCTCTTGCCTATTCTCTTGGAAAG
GATGGACGTCGAGTGCGAGTGATAGAAAGGG

Search form

HAU0579, HAU0579 (genetic_marker) gossypium spp