HAU0276, HAU0276 (genetic_marker) gossypium spp

Marker Overview
NameHAU0276
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AAG)6
PCR ConditionAnnealing temperature: 56.8
Primer 1HAU0276_F: GGCTTGATAGTTCTGCTGGT
Primer 2HAU0276_R: AAATCCTCATTCTCCTGGTG
Product Length179
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A04chromosomeA04:62657876..62658055 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:61836386..61836565 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_2_4chromosomeKI_2_4:7513809..7513988 -Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:20884563..20884741 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr8chromosomeAt_chr8:57461642..57461821 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:44205713..44205892 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:65155298..65155477 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:68230511..68230690 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:65170554..65170733 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:60745980..60746159 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4878supercontigscaffold4878:77135..77314 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:62248829..62249008 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:62811142..62811321 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:63996656..63996835 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:71822777..71822956 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:62388306..62388485 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:68744485..68744664 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:77233452..77233631 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:89977837..89978015 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_02chromosomeB_02:19406157..19406336 -Gossypium anomalum (B1) genome NSF_v1n/a
E04chromosomeE04:63102583..63102761 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:72726150..72726328 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:125671079..125671258 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0276 ID=HAU0276; Name=HAU0276; organism=Gossypium spp.; type=genetic_marker; length=179bp
GGCTTGATAGTTCTGCTGGTTGTTGGGGGGCTACTGCTGACATTTCTTGT
TGGGAACTATGTACTTTACTCGTATGCACAGAAGACTCTTCCACCTAGAA
AAAGAAGCCAATATCAAAGAAGAAGATGAAGAAAGAGAGGCTGAAGCAAG
GAGTTTCTGCACCAGGAGAATGAGGATTT