HAU0274, HAU0274 (genetic_marker) gossypium spp

Marker Overview
NameHAU0274
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TTTA)5
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0274_F: GTTGAGGGACCAAATACAGC
Primer 2HAU0274_R: AGACAGCAAGATGCAAATGA
Product Length297
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:102532041..102532336 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:106310049..106310343 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:121923671..121923965 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold5033.1supercontigscaffold5033.1:1527..1822 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold50973supercontigscaffold50973:109..404 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold3706_A13supercontigscaffold3706_A13:9756..10051 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:106293749..106294044 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:108456390..108456685 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:106627041..106627336 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:105342785..105343080 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold16270supercontigscaffold16270:14334..14628 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A13chromosomeGbar_A13:107313674..107313968 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:111045629..111045923 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:108425281..108425575 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:113720382..113720676 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:108619637..108619931 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:109630542..109630837 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:116012575..116012870 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:120626099..120626393 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch13_At.13N/A22.1HAU0274View
Sequence
>HAU0274 ID=HAU0274; Name=HAU0274; organism=Gossypium spp.; type=genetic_marker; length=297bp
GTTGAGGGACCAAATACAGCATGAACTGTCTGTTAGAAGCAGAATGTGAA
GGCTAGCAGCTTCAACAATGGTTGTGGGAATGTTTTCCCTCTGTCTTGCT
CAAAACTTAAACCGATGTGTCCTAAGGCTGCAGCAACCCAAAAGTCGGCA
ACACGTGGTTTTATTTATTTATTTATTACTATTACAAAATTAAGAGTTCA
ACCATTGTATCAAACAATAACGAACCGGTCTACCATTTATGGTGAAACCG
GTTTCAAATGGAACTAAGCCATGTGATTCATTTGCATCTTGCTGTCT