HAU0272, HAU0272 (genetic_marker) gossypium spp

Marker Overview
NameHAU0272
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AG)9
PCR ConditionAnnealing temperature: 56.6
Primer 1HAU0272_F: GGAAATCGGATTAGGTTCTG
Primer 2HAU0272_R: GGTTGTTGAAACCCAAGTTC
Product Length200
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:29249287..29249489 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:41208985..41209184 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:27011650..27011852 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:39916770..39916969 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:27076239..27076441 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:14574822..14575024 +Gossypioides kirkii genome ISU_v3n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:44891827..44892026 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:34851530..34851732 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:81808273..81808475 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:52223526..52223728 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:86440355..86440554 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:28083890..28084092 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:39244716..39244915 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:28409354..28409556 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:42559391..42559590 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:27698560..27698762 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:41449217..41449416 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:28181039..28181241 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:41791180..41791379 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:27832788..27832990 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:41639398..41639597 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold30951supercontigscaffold30951:5289..5488 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4814supercontigscaffold4814:66634..66836 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:27218676..27218878 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:38681667..38681866 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:26900262..26900464 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:40043362..40043561 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:27901952..27902154 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:41497003..41497202 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:27806757..27806959 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:42905901..42906098 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:27241612..27241814 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:40846786..40846985 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:28553752..28553954 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:42710944..42711143 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:43248812..43249011 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:45847854..45848053 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:26904046..26904248 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:55739928..55740130 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:27538990..27539192 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10_6504715chromosomechr10_6504715:12703..12905 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:20787296..20787498 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:28583932..28584133 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:19008422..19008624 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:16152160..16152359 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:19709979..19710181 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:68957283..68957485 -Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>HAU0272 ID=HAU0272; Name=HAU0272; organism=Gossypium spp.; type=genetic_marker; length=200bp
GGAAATCGGATTAGGTTCTGTATTCTGATGTGCAGAGAGAGAAAGAGAGA
GTCAAAATCGAGAAATAAGAAGAAATTAGATGTTTACTTTATTACAACAA
AAATGATGAGTGAGGGAAGATCACAATGATGATAGGAGGAAGATCATCGT
CGTCTTCATCAACAGCGACAGCAGCAGGTGGAACTTGGGTTTCAACAACC