HAU0269, HAU0269 (genetic_marker) gossypium spp

Marker Overview
NameHAU0269
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TGC)5
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0269_F: ATGGTGTTTGCAAAGATGTG
Primer 2HAU0269_R: CCGAAGATGCCTAACAAAGT
Product Length266
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:100672653..100673124 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:100476317..100476788 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_11chromosomeKI_11:44980463..44980937 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:16297403..16297875 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:56482270..56482724 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:124896485..124896957 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr1chromosomeAt_chr1:9893254..9893725 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:80421461..80421932 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:109541266..109541737 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:108214345..108214816 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:105603632..105604103 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:102434184..102434655 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At11chromosomeAt11:84786389..84786860 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At11chromosomeAt11:84799768..84800239 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At11chromosomeAt11:84788755..84789226 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3391supercontigscaffold3391:18219..18690 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3391supercontigscaffold3391:31598..32069 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3391supercontigscaffold3391:20585..21056 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:98898097..98898568 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:102147969..102148440 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:105931745..105932216 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:112499695..112500166 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:101018571..101019042 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:110348290..110348761 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:114338357..114338828 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:112497535..112498007 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:85926364..85926837 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr_07chromosomeChr_07:38341684..38342158 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:57793166..57793649 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:34483691..34484165 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:30469696..30470170 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:36877083..36877557 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:97319521..97319992 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:85446949..85447421 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:20417054..20417526 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A166.9HAU0269View
Sequence
>HAU0269 ID=HAU0269; Name=HAU0269; organism=Gossypium spp.; type=genetic_marker; length=266bp
ATGGTGTTTGCAAAGATGTGTCAATCCTGAATATCTGGGATCTTTATGTC
ACCAAGTTTTTCGCTCTCAAATATGCTGCTGATGCTGCCTGCACTGTTCT
ACGGGTTGATCAGATTATAATGGCAAAACCAGCTGGAGGTCCTGGAAGGA
GAGAGCAGCCTGCAGGGATGGATGAGGACTAAGTCTTCTGATCTGCAACA
TTATATGCTATTCCTTTTCTCTTTTTTCTCATCAGGGCTGGTTCGGACTT
TGTTAGGCATCTTCGG