HAU0268, HAU0268 (genetic_marker) gossypium spp

Marker Overview
NameHAU0268
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TGG)5
PCR ConditionAnnealing temperature: 56.8
Primer 1HAU0268_F: GCAAAGAAGGCAGAAGTAGC
Primer 2HAU0268_R: TCCATACAAATGCCTTCAAA
Product Length178
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:43004572..43004749 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:71141130..71141307 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:40787407..40787584 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:66650004..66650181 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:34500266..34500443 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:31219413..31219590 -Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:73775284..73775461 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:9104658..9104828 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:13976961..13977138 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:8323348..8323525 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr6chromosomeAt_chr6:56360336..56360513 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:40684916..40685093 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:66076507..66076684 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:42835501..42835678 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:70912365..70912542 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:42414616..42414793 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:72568036..72568213 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:42581685..42581862 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:72677080..72677257 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:40666910..40667087 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:69290321..69290498 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt07chromosomeDt07:17394196..17394373 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6024supercontigscaffold6024:309258..309435 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6024supercontigscaffold6024:296942..297119 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2301supercontigscaffold2301:163511..163688 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:41471770..41471947 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:67088910..67089087 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:43940373..43940550 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:68580033..68580210 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:41718921..41719098 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:68516485..68516662 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:43094243..43094420 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:71399435..71399612 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:42274632..42274809 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:68568522..68568699 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:44284992..44285169 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:74055166..74055343 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:73175974..73176151 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:76019018..76019195 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:40722979..40723156 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:60110922..60111099 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:41259277..41259454 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_06chromosomeChr_06:28372637..28372814 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:42571430..42571607 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:31348478..31348655 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:23522742..23522919 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:28889230..28889407 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:12715530..12715707 +Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:60968698..60968875 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:118644009..118644447 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0268 ID=HAU0268; Name=HAU0268; organism=Gossypium spp.; type=genetic_marker; length=178bp
GCAAAGAAGGCAGAAGTAGCAGCGAAGCAACAGAAGACACAAGGCAAGGG
TAACCCTCCAAAGGGTGGTGCACCCAAAGGTCCCAAGCTTGGTGGTGGTG
GTGGAAAGCGATAAGTTTACCCAGTTATTATCTGTTTTTACATAGGTAGT
ATGTTGATTTTGAAGGCATTTGTATGGA