HAU0259, HAU0259 (genetic_marker) gossypium spp

Marker Overview
NameHAU0259
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AT)11
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0259_F: AGACTCATGTCTCCGGTTGT
Primer 2HAU0259_R: GAATTGGACATGGAGTTTCC
Product Length256
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:585317..585570 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D06chromosomeD06:341784..342040 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:566976..567232 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:640315..640568 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:513630..513886 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:605571..605837 -Gossypioides kirkii genome ISU_v3n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:612051..612306 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:59133697..59133954 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:145325152..145325420 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1148.1supercontigscaffold1148.1:454707..454963 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:37171193..37171446 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1251_A06supercontigscaffold1251_A06:179835..180088 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D06chromosomeD06:322558..322814 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold2067supercontigScaffold2067:44953..45206 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D06chromosomeGhir_D06:506911..507167 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:479221..479477 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:589396..589649 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:486855..487111 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:627551..627807 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:608805..609058 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:1064290..1064543 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9584supercontigscaffold9584:194640..194896 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold528supercontigscaffold528:409428..409683 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9327supercontigscaffold9327:266865..267118 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:517009..517265 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:515111..515364 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:597559..597815 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:628400..628653 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:633029..633283 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:650136..650389 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:688818..689074 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:624128..624381 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:616538..616792 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:619658..619911 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:511908..512164 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:616067..616320 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:641228..641483 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:651242..651497 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:513356..513612 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:97065351..97065618 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:548020..548278 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:598032..598285 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:459995..460249 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:567360..567619 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10_6011450chromosomeChr10_6011450:1396..1652 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:381129..381387 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:440817..441391 -Gossypium lobatum (D7) genome ISU_v1n/a
F06chromosomeF06:223578..223835 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:202801524..202801789 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0259 ID=HAU0259; Name=HAU0259; organism=Gossypium spp.; type=genetic_marker; length=256bp
AGACTCATGTCTCCGGTTGTTAGTGAAATCCTCCGTTCTGGGTTTATGAT
AAATTCTTCACTTAGACGAAGGACTCATCTTGTTCAATCTTTCTCTGTTG
TTTTTCTGTACTGGTTTTATGTGATCTCATAAATAAATTGTCCTATTTTA
CCATATATACATATATATATATAATAAGTAGTTATTTAGCTTACAATTTA
GTCTCTCTTTTTTTCCTTTTAATGGCTTCTTCTAGTGGAAACTCCATGTC
CAATTC