HAU0087, HAU0087 (genetic_marker) Gossypium barbadense

Marker Overview
NameHAU0087
AliasHAU087
Genbank IDEE592880
TypeSSR
SpeciesGossypium barbadense
Germplasm3-79
Source TypeEST
Repeat Motif(TA)7
Primer 1HAU0087_F: AAAGATCGAGGACGAATAGG
Primer 2HAU0087_R: AACAAAACATGTGTGCATGG
Product Length179
Publication[view all]
ContactZhang, Xian-Long
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Xian-Long
Description:Genomics breeding
First name:Xian-Long
Last name:Zhang
Title:Professor
Institution:College of Plant Science and Technology, Huazhong Agricultural University
Address:#1 Shizishan, Wuhan, Hubei 430070
Country:China
Email:xlzhang@mail.hzau.edu.cn
Phone:+86 27 87280510
Fax:+86 27 87280016
Last update:12-Jun-2009
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEE592880
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A04chromosomeA04:79236313..79236489 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:77706800..77706978 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:3888216..3888398 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr8chromosomeDt_chr8:2358750..2358926 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold34072supercontigscaffold34072:509..685 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:81693394..81693570 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:84443261..84443437 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:81942173..81942349 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:77613956..77614134 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At04chromosomeAt04:62877841..62878019 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9660supercontigscaffold9660:91166..91344 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:78183341..78183519 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:78601766..78601944 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:80227358..80227534 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:88727791..88727970 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:78674145..78674325 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:85683105..85683281 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:105638518..105638698 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:107397758..107397942 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_02chromosomeB_02:3820666..3820843 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:24159720..24159896 +Gossypium lobatum (D7) genome ISU_v1n/a
F04chromosomeF04:88119680..88119860 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:173857340..173857516 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
3-79accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch04_At.04N/A75.2HAU087aView
2TM-1 x 3-79, RIL (2014)AD_ch04_At.04N/A76.7HAU087aView
3TM-1 x 3-79, RIL (2012)AD_ch22_Dt.04N/A49.34HAU087bView
4TM-1 x 3-79, RIL (2014)AD_ch22_Dt.04N/A81.8HAU087bView
5DH962 x Jinmian-6, F2 (2009)AD_chUN/A0HAU087View
6DH962 X Ji Mian 5, F2 (2015)AD_ch22_Dt.04N/A21.46HAU087View
7DH962 x Ji Mian 5, RIL (2015)AD_ch22_Dt.04N/A67HAU087View
8TM-1 x 3-79, RIL (2012.v3)AD_ch04_At.04N/A76.49HAU087aView
9TM-1 x 3-79, RIL (2012.v3)AD_ch22_Dt.04N/A81.78HAU087bView
Sequence
>HAU0087 ID=HAU0087; Name=HAU0087; organism=Gossypium barbadense; type=genetic_marker; length=179bp
AAAGATCGAGGACGAATAGGCTATATATATATATATGCATGCTGATGGTG
TTATTATAAAAATAAACTGTTTTATTGCTGTTGTTTTCCTTTGGGTTTTT
GTTTTGGTAGTGTTGAATAAAATTTCCCTTATATTTTCCCATCACGGCCG
TGTCCACCGCCATGCACACATGTTTTGTT